Construct: ORF ccsbBroadEn_13958
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014774.1_s300c1, BRDN0000456406
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SLC17A1 (6568)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6568 | SLC17A1 | solute carrier family 17 me... | NM_005074.5 | 99.8% | 65.6% | 913_914insC;1016T>C |
| 2 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_017011202.1 | 94.5% | 60.6% | (many diffs) |
| 3 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_017011199.1 | 90.2% | 59.3% | 1_150del;1063_1064insC;1166T>C |
| 4 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_017011200.1 | 90.2% | 59.3% | 1_150del;1063_1064insC;1166T>C |
| 5 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_017011201.2 | 90.2% | 59.3% | 1_150del;1063_1064insC;1166T>C |
| 6 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_011514821.2 | 84.6% | 50.5% | 0_1ins213;700_701insC;803T>C |
| 7 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_011514819.2 | 84.6% | 53.7% | (many diffs) |
| 8 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_011514820.2 | 79.7% | 54.4% | (many diffs) |
| 9 | human | 6568 | SLC17A1 | solute carrier family 17 me... | XM_011514818.2 | 78.2% | 61.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1014
- ORF length:
- 945
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAAATGGAT AACCGGTTGC CTCCCAAAAA AGTTCCAGGT TTCTGTTCCT 121 TTCGCTATGG ATTGTCTTTC CTTGTGCACT GTTGTAATGT TATAATAACA GCACAGCGTG 181 CGTGCCTGAA CCTCACAATG GTAGTCATGG TGAATAGCAC AGATCCACAT GGTTTGCCCA 241 ACACCTCCAC AAAGAAGCTC CTGGATAATA TAAAGAACCC TATGTATAAT TGGAGCCCAG 301 ATATCCAGGG AATCATCTTG AGTTCCACCT CCTATGGTGT CATCATCATC CAAGTTCCTG 361 TTGGATACTT CTCTGGAATA TATTCTACAA AGAAAATGAT TGGCTTTGCA TTATGCCTCA 421 GCTCTGTGTT AAGCCTGCTC ATCCCACCAG CAGCTGGAAT TGGAGTAGCT TGGGTCGTTG 481 TATGTCGAGC AGTTCAGGGA GCAGCCCAGG GGATAGTTGC AACAGCCCAG TTTGAAATAT 541 ATGTCAAATG GGCTCCTCCC CTGGAACGAG GCCGACTTAC TTCTATGAGT ACATCAGGGT 601 TTTTGCTGGG ACCCTTTATT GTCCTACTTG TGACTGGAGT TATCTGTGAA TCTCTGGGCT 661 GGCCCATGGT CTTCTATATT TTTGGTGCTT GTGGCTGTGC CGTATGTCTT CTCTGGTTCG 721 TTCTGTTTTA TGATGACCCC AAAGACCACC CATGTATAAG CATCAGTGAA AAGGAATACA 781 TCACATCCTC CCTGGTCCAG CAGGTCAGTT CAAGTAGACA ATCTCTGCCT ATCAAGGCTA 841 TACTTAAGTC GCTTCCAGTC TGGGCTATTT CCACTGGTAG TTTTACGTTT TTCTGGTCAC 901 ATAACATCAT GACACTATAC ACTCCAATGT TTATCAACTC CATGCTTCAT GTTAATATAA 961 AAGAGAATGG GTTCTTGTCT TCCCCTTCCC TATTTGTTTG CCTGGATCTG TGGTAACCTA 1021 GCAGGTCAGT TATCAGACTT CTTCCTGACC AGGAATATTC TCAGCGTAAT TGCTGTCCGG 1081 AAACCCTTCA CAGCAGCAGG ATTTCTCCTT CCTGCAATCT TTGGTGTCTG CCTGCCTTAC 1141 CTGAGTTCCA CCTTCTACAG CATTGTCATT TTCCTAATAC TTGCTGGTGC AACAGGCAGC 1201 TTTTGCTTGG GTGGAGTGTT TATAAATGGC TTGGATATTG CTCCCAGATA TTTTGGATTT 1261 ATTAAAGCAT GTTCAACTTT AACTGGAATG ATAGGAGGAC TAATTGCTTC CACTTTGACT 1321 GGATTGATCC TTAAGCAGGA TCCGGAATCC GCCTGGTTTA AAACCTTCAT CCTGATGGCA 1381 GCCATTAATG TGACTGGCCT AATTTTCTAC CTTATAGTTG CTACAGCAGA AATTCAGGAC 1441 TGGGCTAAAG AAAAACAACA CACACGTCTC TTGCCAACTT TCTTGTACAA AGTTGGcatt 1501 ataagaaagc attgcttatc aatttgttgc aacgaac