Construct: ORF ccsbBroadEn_13961

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013830.1_s300c1, BRDN0000396644
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STXBP2 (6813)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6813 STXBP2 syntaxin binding protein 2 NM_001127396.3 99.9% 99.8% 1766delT
2 human 6813 STXBP2 syntaxin binding protein 2 NM_006949.4 99.4% 99.3% 245_253delAGTCGGTTC;1775delT
3 human 6813 STXBP2 syntaxin binding protein 2 NM_001272034.2 97.6% 97.5% 245_286del;1808delT
4 human 6813 STXBP2 syntaxin binding protein 2 NR_073560.2 86.9% (many diffs)
5 human 6813 STXBP2 syntaxin binding protein 2 XR_001753741.2 82.7% (many diffs)
6 human 6813 STXBP2 syntaxin binding protein 2 XM_011528210.2 77.4% 75.8% (many diffs)
7 human 6813 STXBP2 syntaxin binding protein 2 XM_011528212.3 72.4% 69.4% (many diffs)
8 mouse 20911 Stxbp2 syntaxin binding protein 2 NM_011503.4 87.2% 94% (many diffs)
9 mouse 20911 Stxbp2 syntaxin binding protein 2 XM_006508742.1 83.9% 90.5% (many diffs)
10 mouse 20911 Stxbp2 syntaxin binding protein 2 XM_017312632.1 82.3% 88.7% (many diffs)
11 mouse 20911 Stxbp2 syntaxin binding protein 2 XM_006508743.3 80.5% 86.5% (many diffs)
12 mouse 20911 Stxbp2 syntaxin binding protein 2 XR_001778417.1 59.3% (many diffs)
13 mouse 20911 Stxbp2 syntaxin binding protein 2 XR_001778418.1 59.2% (many diffs)
14 mouse 20911 Stxbp2 syntaxin binding protein 2 XR_001778419.1 58.2% (many diffs)
15 mouse 20911 Stxbp2 syntaxin binding protein 2 XM_006508746.1 53.4% 57% (many diffs)
16 mouse 20911 Stxbp2 syntaxin binding protein 2 XM_011242046.1 53.4% 57% (many diffs)
17 mouse 20911 Stxbp2 syntaxin binding protein 2 XM_017312633.1 44.6% 45.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1836
ORF length:
1770
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TGGGCATGGC GCCCTCGGGG CTGAAGGCGG TGGTGGGGGA AAAAATTCTG AGCGGAGTTA
121TTCGGAGTGT CAAGAAGGAT GGGGAGTGGA AGGTGCTTAT CATGGATCAC CCAAGCATGC
181GCATCTTGTC TTCCTGCTGC AAAATGTCAG ATATCCTGGC TGAGGGCATC ACCATTGTTG
241AAGACATCAA CAAACGGCGG GAACCCATTC CCAGTCTGGA GGCCATTTAT TTGCTGAGCC
301CCACGGAGAA GGCCCTGATC AAAGACTTCC AGGGGACCCC GACTTTCACC TACAAAGCGG
361CCCATATCTT CTTCACCGAC ACCTGCCCCG AGCCCCTGTT CAGTGAGCTA GGCCGCTCTC
421GTCTGGCAAA GGTGGTGAAG ACGTTGAAGG AGATTCACCT TGCCTTCCTC CCCTACGAGG
481CCCAGGTGTT CTCCCTCGAT GCTCCCCACA GCACCTACAA CCTCTACTGC CCCTTCCGGG
541CAGAGGAGCG CACGCGGCAG CTCGAGGTGC TGGCCCAGCA GATTGCCACG CTGTGCGCCA
601CCCTGCAGGA GTACCCGGCC ATCCGCTACC GCAAGGGCCC AGAGGACACA GCCCAGTTGG
661CCCACGCCGT CCTGGCCAAG CTGAACGCCT TCAAGGCAGA CACTCCCAGT CTGGGCGAGG
721GCCCAGAGAA AACCCGCTCC CAGCTGCTGA TAATGGACCG GGCAGCTGAC CCCGTGTCCC
781CACTACTGCA TGAGCTCACG TTCCAGGCCA TGGCGTATGA TCTGCTGGAC ATAGAGCAGG
841ACACATACAG GTATGAGACC ACCGGGCTGA GCGAGGCGCG GGAGAAGGCC GTCTTGCTGG
901ACGAGGACGA TGACTTGTGG GTGGAGCTTC GCCACATGCA TATCGCAGAT GTGTCCAAGA
961AGGTCACGGA GCTCCTGAGG ACCTTCTGTG AGAGCAAGAG GCTGACCACG GACAAGGCGA
1021ACATCAAAGA CCTATCCCAG ATCCTGAAAA AGATGCCGCA GTACCAGAAG GAGCTGAATA
1081AGTATTCTAC GCACCTGCAT CTAGCAGATG ATTGTATGAA GCACTTCAAG GGCTCGGTGG
1141AGAAGCTGTG TAGTGTGGAG CAGGACCTGG CCATGGGCTC CGACGCAGAG GGGGAGAAGA
1201TCAAGGACTC CATGAAGCTG ATCGTTCCGG TGCTGCTGGA CGCGGCGGTG CCCGCCTACG
1261ACAAGATCCG GGTCCTGCTG CTCTACATCC TCCTTCGGAA TGGTGTGAGT GAGGAGAACC
1321TGGCCAAGCT GATCCAGCAT GCCAATGTAC AGGCGCACAG CAGCCTCATC CGTAACCTGG
1381AGCAGCTGGG AGGCACTGTC ACCAACCCCG GGGGCTCGGG GACCTCCAGC CGGCTGGAGC
1441CGAGAGAACG CATGGAGCCC ACCTATCAGC TGTCCCGCTG GACCCCGGTC ATCAAGGATG
1501TAATGGAGGA CGCCGTGGAG GACCGGCTGG ACAGGAACCT GTGGCCCTTC GTATCCGACC
1561CCGCCCCCAC GGCCAGCTCC CAGGCCGCTG TCAGTGCCCG CTTCGGTCAC TGGCACAAGA
1621ACAAGGCTGG CATAGAAGCC CGGGCGGGCC CCCGGCTCAT CGTGTATGTC ATGGGCGGTG
1681TGGCCATGTC AGAGATGAGG GCCGCCTACG AGGTGACCAG GGCCACCGAG GGCAAGTGGG
1741AGGTGCTCAT TGGCTCCTCA CACATCCTCA CCCCGACCCG CTTCCTGGAT GACCTGAAGG
1801CACTGGACAA GAAGCTGGAG GACATTGCCC GCCCTGCCCA ACTTTCTTGT ACAAAGTtgg
1861cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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