Construct: ORF ccsbBroadEn_13982

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017985.1_s300c1, BRDN0000386022
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
XBP1 (7494)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7494 XBP1 X-box binding protein 1 NM_005080.3 99.8% 99.6% 10G>A
2 human 7494 XBP1 X-box binding protein 1 NM_001079539.1 65.5% 41.5% 10G>A;492_493ins26;758_1128del
3 mouse 22433 Xbp1 X-box binding protein 1 NM_013842.3 80.6% 76.6% (many diffs)
4 mouse 22433 Xbp1 X-box binding protein 1 NM_001271730.1 55.1% 39% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
849
ORF length:
783
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GGTGATGGCA GCCGCGCCGA ACCCGGCCGA CGGGACCCCT AAAGTTCTGC
121TTCTGTCGGG GCAGCCCGCC TCCGCCGCCG GAgccccggc cggccaggcc ctgccGCTCA
181TGGTGCCAGC CCAGAGAGGG GCCAGCCCGG AGGCAGCGAG CGGGGGGCTG CCCCAGGCGC
241GCAAGCGACA GCGCCTCACG CACCTGAGCC CCGAGGAGAA GGCGCTGAGG AGGAAACTGA
301AAAACAGAGT AGCAGCTCAG ACTGCCAGAG ATCGAAAGAA GGCTCGAATG AGTGAGCTGG
361AACAGCAAGT GGTAGATTTA GAAGAAGAGA ACCAAAAACT TTTGCTAGAA AATCAGCTTT
421TACGAGAGAA AACTCATGGC CTTGTAGTTG AGAACCAGGA GTTAAGACAG CGCTTGGGGA
481TGGATGCCCT GGTTGCTGAA GAGGAGGCGG AAGCCAAGGG GAATGAAGTG AGGCCAGTGG
541CCGGGTCTGC TGAGTCCGCA GCACTCAGAC TACGTGCACC TCTGCAGCAG GTGCAGGCCC
601AGTTGTCACC CCTCCAGAAC ATCTCCCCAT GGATTCTGGC GGTATTGACT CTTCAGATTC
661AGAGTCTGAT ATCCTGTTGG GCATTCTGGA CAACTTGGAC CCAGTCATGT TCTTCAAATG
721CCCTTCCCCA GAGCCTGCCA GCCTGGAGGA GCTCCCAGAG GTCTACCCAG AAGGACCCAG
781TTCCTTACCA GCCTCCCTTT CTCTGTCAGT GGGGACGTCA TCAGCCAAGC TGGAAGCCAT
841TAATGAACTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
901tttgttgcaa cgaac

Download FASTA (ORF) (Full)