Construct: ORF ccsbBroadEn_13984
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011436.1_s300c1, BRDN0000394838
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF182 (7569)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7569 | ZNF182 | zinc finger protein 182 | NM_001178099.2 | 99.6% | 99.8% | (many diffs) |
| 2 | human | 7569 | ZNF182 | zinc finger protein 182 | NM_006962.2 | 99.6% | 99.8% | (many diffs) |
| 3 | human | 7569 | ZNF182 | zinc finger protein 182 | NM_001007088.2 | 96.5% | 96.2% | (many diffs) |
| 4 | mouse | 319535 | Zfp182 | zinc finger protein 182 | NM_001013387.2 | 78.5% | 79.8% | (many diffs) |
| 5 | mouse | 319535 | Zfp182 | zinc finger protein 182 | NM_001111076.1 | 78.5% | 79.8% | (many diffs) |
| 6 | mouse | 319535 | Zfp182 | zinc finger protein 182 | XM_017318523.1 | 77.5% | 76.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1986
- ORF length:
- 1917
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACACCAGCA TCTGCATCTG GTGAGGACTC AGGAAGCTTC TACTCATGGC 121 AGAAGGCAAA GAGGGAACAG GGGCTAGTGA CATTTGAAGA TGTAGCTGTG GATTTCACCC 181 AGGAGGAGTG GCAGTACCTG AACCCACCAC AGAGGACCCT GTACAGAGAC GTGATGCTGG 241 AGACCTACAG CAACTTGGTC TTTGTGGGGC AGCAGGTTAC CAAACCAAAC CTCATCCTCA 301 AGTTGGAGGT AGAAGAATGC CCGGCAGAAG GAAAAATCCC ATTTTGGAAC TTTCCAGAAG 361 TCTGTCAAGT TGATGAACAG ATTGAGAGGC AACATCAGGA TGACCAAGAT AAATGTCTGC 421 TGATGCAAGT TGGATTTTCT GACAAGAAAA CAATTATCAC CAAGAGTGCT CGTGACTGTC 481 ATGAGTTTGG AAACATACTT CATCTGAGTA CAAACCTTGT TGCTTCAATA CAAAGACCCG 541 ATAAACACGA ATCATTTGGA AATAATATGG TAGATAATTT AGACTTATTT AGTAGAAGTT 601 CTGCAGAAAA TAAATATGAT AATGGATGTG CAAAATTGTT CTTCCATACT GAGTATGAGA 661 AAACAAATCC TGGAATGAAG CCCTATGGCT ATAAAGAGTG TGGGAAAGGT CTTAGGCGAA 721 AGAAAGGCCT TAGTCTACAT CAGAGAATTA AAAATGGAGA GAAACCCTTT GAATGTACTG 781 CATGTAGGAA AACCTTCAGC AAGAAGTCAC ACCTCATTGT ACATTGGAGA ACTCATACGG 841 GAGAGAAACC TTTTGGATGT ACCGAATGTG GAAAAGCTTT TAGCCAAAAA TCTCAGCTCA 901 TTATACACTT GCGAACTCAT ACAGGAGAGA GACCCTTTGA GTGTCCTGAA TGTGGAAAAG 961 CCTTCAGAGA AAAGTCAACT GTCATCATAC ATTACAGGAC TCACACAGGA GAAAAACCTT 1021 ATGAATGTAA TGAATGTGGA AAAGCCTTCA CTCAGAAGTC CAACCTCATT GTCCATCAGA 1081 AAACCCACAC TGGAGAGAAA ACCTATGAAT GCACTAAATG TGGAGAATCT TTCATACAGA 1141 AGCTTGATCT AATTATACAT CATAGTACCC ATACAGGAAA GAAACCCCAT GAATGTAATG 1201 AGTGTAAGAA AACTTTCAGT GATAAGTCAA CTCTCATTAT ACACCAGAGA ACTCATACTG 1261 GAGAGAAACC CTATAAATGT ACAGAATGTG GGAAGTCTTT CAATGAGAAG TCAACCCTCA 1321 TTGTGCATCA AAGAACTCAT ACAGGAGAGA AACCCTATGA ATGTGATGTG TGTGGAAAAA 1381 CCTTCACGCA AAAGTCAAAC CTTGGTGTAC ATCAGAGAAC TCATTCAGGA GAGAAACCCT 1441 TTGAATGTAA TGAATGTGAG AAAGCCTTCT CTCAGAAGTC CTACCTCATG CTGCATCAGA 1501 GAGGTCATAC AGGAGAGAAA CCTTACGAGT GCAATGAATG TGAAAAAGCA TTTTCACAGA 1561 AATCATATCT CATTATACAT CAAAGAACTC ATACAGAAGA AAAACCCTAT AAATGTAATG 1621 AATGTGGCAA AGCCTTCAGA GAAAAGTCAA AGCTCATTAT ACATCAGAGA ATTCATACAG 1681 GAGAGAAACC TTATGAATGT CCTGTGTGTT GGAAAGCTTT TAGCCAGAAG TCACAGCTCA 1741 TAATACATCA GAGAACGCAC ACGGGAGAGA AACCCTATGC ATGCACTGAG TGTGGCAAAG 1801 CCTTCCGAGA AAAGTCAACA TTCACTGTAC ACCAGAGAAC TCATACTGGA GAGAAACCCT 1861 ATAAATGTAC AGAATGTGGG AAAGCCTTTA CCCAAAAATC AAACCTTATT GTACATCAGC 1921 GAACCCATGC AGGAAAGAAA GCCCATGGAA GAGGCCACAC TCGGAAGTCA AAGTTCATGG 1981 CACATTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 2041 gttgcaacga ac