Construct: ORF ccsbBroadEn_13991

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000374.1_s300c1, BRDN0000457350
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
NCOA3 (8202)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8202 NCOA3 nuclear receptor coactivator 3 NM_006534.4 99.9% 85.4% 3638A>C;3640delC
2 human 8202 NCOA3 nuclear receptor coactivator 3 NM_001174087.2 99.7% 85.3% 3637_3646delCAGGTGAGCT;3649C>G
3 human 8202 NCOA3 nuclear receptor coactivator 3 NM_181659.3 99.6% 85.2% 3638A>C;3640_3652del
4 human 8202 NCOA3 nuclear receptor coactivator 3 NM_001174088.2 98.2% 83.8% (many diffs)
5 mouse 17979 Ncoa3 nuclear receptor coactivator 3 NM_008679.3 80.3% 72.9% (many diffs)
6 mouse 17979 Ncoa3 nuclear receptor coactivator 3 XM_006498888.2 80.3% 72.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3756
ORF length:
3687
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGTGGATTA GGAGAAAACT TGGATCCACT GGCCAGTGAT TCACGAAAAC
121GCAAATTGCC ATGTGATACT CCAGGACAAG GTCTTACCTG CAGTGGTGAA AAACGGAGAC
181GGGAGCAGGA AAGTAAATAT ATTGAAGAAT TGGCTGAGCT GATATCTGCC AATCTTAGTG
241ATATTGACAA TTTCAATGTC AAACCAGATA AATGTGCGAT TTTAAAGGAA ACAGTAAGAC
301AGATACGTCA AATAAAAGAG CAAGGAAAAA CTATTTCCAA TGATGATGAT GTTCAAAAAG
361CCGATGTATC TTCTACAGGG CAGGGAGTTA TTGATAAAGA CTCCTTAGGA CCGCTTTTAC
421TTCAGGCATT GGATGGTTTC CTATTTGTGG TGAATCGAGA CGGAAACATT GTATTTGTAT
481CAGAAAATGT CACACAATAC CTGCAATATA AGCAAGAGGA CCTGGTTAAC ACAAGTGTTT
541ACAATATCTT ACATGAAGAA GACAGAAAGG ATTTTCTTAA GAATTTACCA AAATCTACAG
601TTAATGGAGT TTCCTGGACA AATGAGACCC AAAGACAAAA AAGCCATACA TTTAATTGCC
661GTATGTTGAT GAAAACACCA CATGATATTC TGGAAGACAT AAACGCCAGT CCTGAAATGC
721GCCAGAGATA TGAAACAATG CAGTGCTTTG CCCTGTCTCA GCCACGAGCT ATGATGGAGG
781AAGGGGAAGA TTTGCAATCT TGTATGATCT GTGTGGCACG CCGCATTACT ACAGGAGAAA
841GAACATTTCC ATCAAACCCT GAGAGCTTTA TTACCAGACA TGATCTTTCA GGAAAGGTTG
901TCAATATAGA TACAAATTCA CTGAGATCCT CCATGAGGCC TGGCTTTGAA GATATAATCC
961GAAGGTGTAT TCAGAGATTT TTTAGTCTAA ATGATGGGCA GTCATGGTCC CAGAAACGTC
1021ACTATCAAGA AGCTTATCTT AATGGCCATG CAGAAACCCC AGTATATCGA TTCTCGTTGG
1081CTGATGGAAC TATAGTGACT GCACAGACAA AAAGCAAACT CTTCCGAAAT CCTGTAACAA
1141ATGATCGACA TGGCTTTGTC TCAACCCACT TCCTTCAGAG AGAACAGAAT GGATATAGAC
1201CAAACCCAAA TCCTGTTGGA CAAGGGATTA GACCACCTAT GGCTGGATGC AACAGTTCGG
1261TAGGCGGCAT GAGTATGTCG CCAAACCAAG GCTTACAGAT GCCGAGCAGC AGGGCCTATG
1321GCTTGGCAGA CCCTAGCACC ACAGGGCAGA TGAGTGGAGC TAGGTATGGG GGTTCCAGTA
1381ACATAGCTTC ATTGACCCCT GGGCCAGGCA TGCAATCACC ATCTTCCTAC CAGAACAACA
1441ACTATGGGCT CAACATGAGT AGCCCCCCAC ATGGGAGTCC TGGTCTTGCC CCAAACCAGC
1501AGAATATCAT GATTTCTCCT CGTAATCGTG GGAGTCCAAA GATAGCCTCA CATCAGTTTT
1561CTCCTGTTGC AGGTGTGCAC TCTCCCATGG CATCTTCTGG CAATACTGGG AACCACAGCT
1621TTTCCAGCAG CTCTCTCAGT GCCCTGCAAG CCATCAGTGA AGGTGTGGGG ACTTCCCTTT
1681TATCTACTCT GTCATCACCA GGCCCCAAAT TGGATAACTC TCCCAATATG AATATTACCC
1741AACCAAGTAA AGTAAGCAAT CAGGATTCCA AGAGTCCTCT GGGCTTTTAT TGCGACCAAA
1801ATCCAGTGGA GAGTTCAATG TGTCAGTCAA ATAGCAGAGA TCACCTCAGT GACAAAGAAA
1861GTAAGGAGAG CAGTGTTGAG GGGGCAGAGA ATCAAAGGGG TCCTTTGGAA AGCAAAGGTC
1921ATAAAAAATT ACTGCAGTTA CTTACCTGTT CTTCTGATGA CCGGGGTCAT TCCTCCTTGA
1981CCAACTCCCC CCTAGATTCA AGTTGTAAAG AATCTTCTGT TAGTGTCACC AGCCCCTCTG
2041GAGTCTCCTC CTCTACATCT GGAGGAGTAT CCTCTACATC CAATATGCAT GGGTCACTGT
2101TACAAGAGAA GCACCGGATT TTGCACAAGT TGCTGCAGAA TGGGAATTCA CCAGCTGAGG
2161TAGCCAAGAT TACTGCAGAA GCCACTGGGA AAGACACCAG CAGTATAACT TCTTGTGGGG
2221ACGGAAATGT TGTCAAGCAG GAGCAGCTAA GTCCTAAGAA GAAGGAGAAT AATGCACTTC
2281TTAGATACCT GCTGGACAGG GATGATCCTA GTGATGCACT CTCTAAAGAA CTACAGCCCC
2341AAGTGGAAGG AGTGGATAAT AAAATGAGTC AGTGCACCAG CTCCACCATT CCTAGCTCAA
2401GTCAAGAGAA AGACCCTAAA ATTAAGACAG AGACAAGTGA AGAGGGATCT GGAGACTTGG
2461ATAATCTAGA TGCTATTCTT GGTGATCTGA CTAGTTCTGA CTTTTACAAT AATTCCATAT
2521CCTCAAATGG TAGTCATCTG GGGACTAAGC AACAGGTGTT TCAAGGAACT AATTCTCTGG
2581GTTTGAAAAG TTCACAGTCT GTGCAGTCTA TTCGTCCTCC ATATAACCGA GCAGTGTCTC
2641TGGATAGCCC TGTTTCTGTT GGCTCAAGTC CTCCAGTAAA AAATATCAGT GCTTTCCCCA
2701TGTTACCAAA GCAACCCATG TTGGGTGGGA ATCCAAGAAT GATGGATAGT CAGGAAAATT
2761ATGGCTCAAG TATGGGTGGG CCAAACCGAA ATGTGACTGT GACTCAGACT CCTTCCTCAG
2821GAGACTGGGG CTTACCAAAC TCAAAGGCCG GCAGAATGGA ACCTATGAAT TCAAACTCCA
2881TGGGAAGACC AGGAGGAGAT TATAATACTT CTTTACCCAG ACCTGCACTG GGTGGCTCTA
2941TTCCCACATT GCCTCTTCGG TCTAATAGCA TACCAGGTGC GAGACCAGTA TTGCAACAGC
3001AGCAGCAGAT GCTTCAAATG AGGCCTGGTG AAATCCCCAT GGGAATGGGG GCTAATCCCT
3061ATGGCCAAGC AGCAGCATCT AACCAACTGG GTTCCTGGCC CGATGGCATG TTGTCCATGG
3121AACAAGTTTC TCATGGCACT CAAAATAGGC CTCTTCTTAG GAATTCCCTG GATGATCTTG
3181TTGGGCCACC TTCCAACCTG GAAGGCCAGA GTGACGAAAG AGCATTATTG GACCAGCTGC
3241ACACTCTTCT CAGCAACACA GATGCCACAG GCCTGGAAGA AATTGACAGA GCTTTGGGCA
3301TTCCTGAACT TGTCAATCAG GGACAGGCAT TAGAGCCCAA ACAGGATGCT TTCCAAGGCC
3361AAGAAGCAGC AGTAATGATG GATCAGAAGG CAGGATTATA TGGACAGACA TACCCAGCAC
3421AGGGGCCTCC AATGCAAGGA GGCTTTCATC TTCAGGGACA ATCACCATCT TTTAACTCTA
3481TGATGAATCA GATGAACCAG CAAGGCAATT TTCCTCTCCA AGGAATGCAC CCACGAGCCA
3541ACATCATGAG ACCCCGGACA AACACCCCCA AGCAACTTAG AATGCAGCTT CAGCAGAGGC
3601TGCAGGGCCA GCAGTTTTTG AATCAGAGCC GACAGGCACT TGAATTGAAA ATGGAAAACC
3661CTACTGCTGG TGGTGCTGCG GTGATGAGGC CTATGATGCA GCCCCCGAGG GTTTTCTTAA
3721TGCTCAAATG GTCGCCCAAC GCAGCAGAGA GCTGCTAAGT CATCACTTCC GACAACAGAG
3781GGTGGCTATG ATGATGCAGC AGCAGCAGCA GCAGCAACAG CAGCAGCAGC AGCAGCAGCA
3841GCAGCAACAG CAACAGCAAC AGCAACAGCA GCAACAGCAG CAAACCCAGG CCTTCAGCCC
3901ACCTCCTAAT GTGACTGCTT CCCCCAGCAT GGATGGGCTT TTGGCAGGAC CCACAATGCC
3961ACAAGCTCCT CCGCAACAGT TTCCATATCA ACCAAATTAT GGAATGGGAC AACAACCAGA
4021TCCAGCCTTT GGTCGAGTGT CTAGTCCTCC CAATGCAATG ATGTCGTCAA GAATGGGTCC
4081CTCCCAGAAT CCCATGATGC AACACCCGCA GGCTGCATCC ATCTATCAGT CCTCAGAAAT
4141GAAGGGCTGG CCATCAGGAA ATTTGGCCAG GAACAGCTCC TTTTCCCAGC AGCAGTTTGC
4201CCACCAGGGG AATCCTGCAG TGTATAGTAT GGTGCACATG AATGGCAGCA GTGGTCACAT
4261GGGACAGATG AACATGAACC CCATGCCCAT GTCTGGCATG CCTATGGGTC CTGATCAGAA
4321ATACTGCTTG CCAACTTTCT TGTACAAAGT TGGcattata agaaagcatt gcttatcaat
4381ttgttgcaac gaac

Download FASTA (ORF) (Full)