Construct: ORF ccsbBroadEn_14026

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017796.1_s300c1, BRDN0000389826
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZFYVE16 (9765)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742384.1 84.4% (many diffs)
2 human 9765 ZFYVE16 zinc finger FYVE-type conta... NM_001105251.4 78% 77.8% (many diffs)
3 human 9765 ZFYVE16 zinc finger FYVE-type conta... NM_001284236.3 78% 77.8% (many diffs)
4 human 9765 ZFYVE16 zinc finger FYVE-type conta... NM_001349434.2 78% 77.8% (many diffs)
5 human 9765 ZFYVE16 zinc finger FYVE-type conta... NM_014733.6 78% 77.8% (many diffs)
6 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_005248632.4 78% 77.8% (many diffs)
7 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_017010091.1 78% 77.8% (many diffs)
8 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_017010092.2 78% 77.8% (many diffs)
9 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_024446270.1 78% 77.8% (many diffs)
10 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742381.1 72.5% (many diffs)
11 human 9765 ZFYVE16 zinc finger FYVE-type conta... NM_001284237.2 66.9% 66.6% (many diffs)
12 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742373.1 56.3% (many diffs)
13 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742379.2 55.9% (many diffs)
14 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742382.2 55.6% (many diffs)
15 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742375.1 54.2% (many diffs)
16 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742380.2 53.8% (many diffs)
17 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742376.2 49.1% (many diffs)
18 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742378.2 48.8% (many diffs)
19 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_001742377.2 47.7% (many diffs)
20 human 9765 ZFYVE16 zinc finger FYVE-type conta... XR_002956199.1 38.5% (many diffs)
21 human 9765 ZFYVE16 zinc finger FYVE-type conta... NR_146173.2 33.1% (many diffs)
22 human 9765 ZFYVE16 zinc finger FYVE-type conta... NR_146174.2 32.6% (many diffs)
23 human 9765 ZFYVE16 zinc finger FYVE-type conta... NR_146172.2 32.5% (many diffs)
24 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_024446271.1 25.3% 25.2% (many diffs)
25 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_024446272.1 25.3% 25.2% (many diffs)
26 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_024446273.1 25.3% 25.2% (many diffs)
27 human 9765 ZFYVE16 zinc finger FYVE-type conta... XM_017010096.1 19.2% 19.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3681
ORF length:
3615
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CAGTTATTTT AAAGCAGCTG TCAGTGACTT GGACAAACTC CTTGATGATT
121TTGAACAGAA CCCAGATGAA CAAGATTATC TCCAAGATGT ACAAAATGCA TATGATTCTA
181ACCACTGCTC AGTTTCTTCA GAGTTGGCTT CCTCACAGCG AACTTCATTG CTCCCAAAAG
241ACCAAGAGTG CGTTAATAGT TGTGCCTCAT CAGAAACAAG CTATGGAACA AATGAGAGTT
301CCCTGAATGA AAAAACACTC AAGGGACTTA CTTCTATACA AAATGAAAAA AATGTAACAG
361GACTTGATCT TCTTTCTTCT GTGGATGGTG GTACTTCAGA TGAAATCCAG CCGTTATATA
421TGGGACGATG TAGTAAACCT ATCTGTGATC TGATAAGTGA CATGGGTAAC TTAGTTCATG
481CAACCAATAG TGAAGAAGAT ATTAAAAAAT TATTGCCAGA TGATTTTAAG TCTAATGCAG
541ATTCCTTGAT TGGATTGGAT TTATCTTCAG TGTCAGATAC TCCCTGTGTT TCTTCAACAG
601ACCATGATAG TGATACTGTC AGAGAACAAC AGAATGATAC CAGTTCTGAA TTACAAAATA
661GAGAAATCGG AGGAATCAAA GAATTGGGTA TAAAAGTAGA TACAACACTT TCAGATTCCT
721ATAATTACAG TGGAACAGAA AATTTAAAAG ATAAAAAGAT CTTTAATCAG TTAGAATCAA
781TTGTTGATTT TAACATGTCA TCTGCTTTGA CTCGACAAAG TTCCAAAATG TTTCATGCCA
841AAGACAAGCT ACAACACAAG AGCCAGCCAT GTGGATTACT AAAAGATGTT GGCTTAGTAA
901AAGAGGAAGT AGATGTGGCA GTCATAACTG CCGCAGAATG TTTAAAAGAA GAGGGCAAGA
961CAAGTGCTTT GACCTGCAGC CTTCCGAAAA ATGAAGATTT ATGCTTAAAT GATTCAAATT
1021CAAGAGATGA AAATTTCAAA TTACCTGACT TTTCCTTTCA GGAAGATAAG ACTGTTATAA
1081AACAATCTGC ACAAGAAGAC TCAAAAAGTT TAGACCTTAA GGATAATGAT GTAATCCAAG
1141ATTCCTCTTC AGCTTTACAT GTTTCCGGTA AAGATGTGCC GTCCTCATTG TCCTGTCTTC
1201CTGCGTCTGG GTCTATGTGT GGATCATTAA TTGAAAGTAA AGCACGGGGT GATTTTTTAC
1261CTCAGCATGA ACATAAAGAT AATATACAAG ATGCAGTGAC TATACATGAA GAAATACAGA
1321ACAGTGTTGT TCTAGGTGGG GAACCATTCA AAGAGAATGA TCTTTTGAAA CAGGAAAAAT
1381GTAAAAGCAT ACTCCTTCAG TCATTAATTG AAGGGATGGA AGACAGAAAG ATAGATCCTG
1441ACCAGACAGT AATCAGAGCT GAGTCTTTGG ATGGTGGTGA CACCAGTTCT ACAGTTGTAG
1501AATCTCAAGA GGGGCTTTCT GGCACTCATG TCCCAGAGTC TTCTGATTGT TGTGAAGGTT
1561TTATTAATAC TTTTTCAAGC AATGATATGG ATGGGCAAGA CTTAGATTAC TTTAATATTG
1621ATGAAGGCGC AAAAAGTGGC CCACTAATTA GTGATGCTGA ACTTGATGCC TTTCTGACAG
1681AACAGTATCT TCAGACCACT AACATAAAGT CTTTTGAAGA AAATGTAAAT GACTCTAAAT
1741CGCAAATGAA TCAGATAGAT ATGAAAGGCT TAGATGATGG AAACATCAAT AATATATATT
1801TCAATGCAGA AGCAGGAGCT ATTGGGGAAA GTCATGGTAT TAATATAATT TGTGAAACAG
1861TTGATAAACA AAATACAATA GAAAATGGCC TTTCTTTAGG AGAAAAAAGC ACTATTCCAG
1921TTCAACAAGG GTTACCTACC AGTAAGTCTG AGATTACAAA TCAATTATCA GTCTCTGATA
1981TTAACAGTCA ATCTGTTGGA GGGGCCAGAC CTAAGCAATT GTTTAGCCTT CCATCAAGAA
2041CAAGGAGTTC AAAGGACCTG AATAAGCCAG ATGTTCCAGA TACAATAGAA AGTGAACCCA
2101GCACAGCAGA TACCGTTGTT CCAATCACTT GTGCTATAGA TTCTACAGCT GATCCACAGG
2161TTAGCTTCAA CTCTAATTAC ATTGATATAG AAAGTAATTC TGAAGGTGGA TCTAGTTTCG
2221TAACTGCAAA TGAAGATTCT GTACCTGAAA ACACTTGCAA AGAAGGCTTG GTTTTGGGCC
2281AGAAACAGCC TACTTGGGTT CCTGATTCAG AAGCTCCAAA CTGTATGAAC TGCCAAGTCA
2341AATTTACTTT TACCAAACGG CGACACCATT GCCGAGCATG TGGGAAAGTA TTTTGTGGTG
2401TCTGTTGTAA TAGGAAGTGT AAACTGCAAT ATCTAGAAAA GGAAGCAAGA GTATGTGTAG
2461TCTGCTATGA AACTATTAGT AAAGCTCAGG CATTTGAAAG GATGATGAGT CCAACTGGTT
2521CTAATCTTAA GTCTAATCAT TCTGATGAAT GTACTACTGT CCAGCCTCCT CAGGAGAACC
2581AAACATCCAG TATACCTTCA CCAGCAACTT TGCCAGTCTC AGCACTTAAA CAACCAGGTG
2641TTGAAGGACT ATGTTCCAAA GAACAGAAGA GAGTATGGTT TGCAGATGGT ATATTGCCCA
2701ATGGTGAAGT TGCAGATACA ACAAAATTAT CATCTGGAAG TAAAAGATGT TCTGAAGACT
2761TTAGTCCTCT CTCACCTGAT GTGCCTATGA CAGTAAACAC AGTGGATCAT TCCCATTCTA
2821CTACAGTGGA AAAGCCAAAC AATGAGACAG GAGATATTAC AAGAAATGAG ATAATTCAGA
2881GTCCTATTTC TCAGGTTCCA TCAGTGGAAA AATTGTCTAT GAACACAGGA AATGAGGGGT
2941TACCTACTTC TGGTTCATTT ACACTAGATG ATGATGTTTT TGCAGAAACT GAAGAACCAT
3001CTAGTCCTAC TGGTGTCTTA GTTAACAGCA ATTTACCTAT TGCTAGTATT TCAGATTATA
3061GGTTACTGTG TGATATTAAC AAGTATGTCT GCAATAAGAT TAGTCTTCTA CCTAATGATG
3121AGGACAGTTT GCCCCCACTT CTGGTTGCAT CTGGAGAAAA GGGATCAGTG CCTGTAGTAG
3181AAGAACATCC ATCTCATGAG CAGATCATTT TGCTTCTTGA AGGTGAAGGC TTTCATCCTG
3241TTACATTTGT CCTAAATGCT AATCTACTCG TGAATGTCAA ATTCATATTT TATTCCTCAG
3301ACAAATATTG GTACTTTTCA ACCAATGGAT TGCATGGCTT GGGACAGGCA GAAATTATTA
3361TTCTATTGTT ATGTTTGCCA AATGAAGATA CTATTCCTAA GGACATCTTC AGACTATTTA
3421TCACCATATA TAAGGATGCT CTAAAAGGAA AATACATAGA AAACTTGGAC AATATTACCT
3481TTACTGAGAG TTTTCTCAGT AGCAAGGATC ACGGAGGATT CCTGTTTATT ACACCTACTT
3541TTCAGAAACT TGATGATCTC TCATTACCAA GTAATCCTTT TCTTTGTGGA ATTCTTATCC
3601AGAAGCTTGA GATTCCCTGG GCAAAGGTTT TTCCTATGCG TTTAATGTTG AGATTGGGTG
3661CAGAATATAA AAGTAAGTTT TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
3721attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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