Construct: ORF ccsbBroadEn_14080
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004300.1_s300c1, BRDN0000393544
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LARP1 (23367)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367715.1 | 34.3% | 34.2% | 1_1623del;1627C>G |
| 2 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367716.1 | 32.9% | 32.8% | 1_1725del;1729C>G |
| 3 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367713.1 | 31.7% | 31.6% | 1_1824del;1828C>G |
| 4 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367714.1 | 31.7% | 31.6% | 1_1824del;1828C>G |
| 5 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367719.1 | 31.7% | 31.6% | 1_1824del;1828C>G |
| 6 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_005268408.3 | 31.7% | 31.6% | 1_1824del;1828C>G |
| 7 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_006714775.2 | 29.5% | 29.5% | 1_2016del;2020C>G |
| 8 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537617.1 | 29.4% | 29.3% | 1_2034del;2038C>G |
| 9 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537616.1 | 28.6% | 28.5% | 1_2115del;2119C>G |
| 10 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367717.1 | 28.4% | 28.3% | 1_2130del;2134C>G |
| 11 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_015315.5 | 27.7% | 27.6% | 1_2208del;2212C>G |
| 12 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537615.1 | 27.4% | 27.4% | 1_2238del;2242C>G |
| 13 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_001367718.1 | 26.5% | 26.5% | 1_2340del;2344C>G |
| 14 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | XM_011537614.1 | 26.4% | 26.3% | 1_2361del;2365C>G |
| 15 | human | 23367 | LARP1 | La ribonucleoprotein 1, tra... | NM_033551.3 | 25.7% | 25.7% | 1_2439del;2443C>G |
| 16 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | XM_011249280.2 | 28.7% | 30.1% | (many diffs) |
| 17 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | XM_017314797.1 | 28.7% | 30.1% | (many diffs) |
| 18 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | NM_028451.1 | 23.9% | 25.1% | (many diffs) |
| 19 | mouse | 73158 | Larp1 | La ribonucleoprotein domain... | XM_006534334.2 | 23.5% | 24.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 915
- ORF length:
- 849
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCGAAAAAGA AAGACAAGAC ACAGTTCAAA CCCACCCTTG GAGAGCCATG 121 TGGGCTGGGT GATGGATTCC CGTGAGCACA GGCCCCGTAC TGCTTCCATC AGCTCCAGCC 181 CCTCAGAAGG GACGCCTACA GTTGGCAGCT ATGGCTGTAC CCCTCAGTCA TTGCCCAAGT 241 TCCAGCATCC TTCCCATGAA CTGCTCAAGG AAAATGGCTT CACACAACAC GTCTACCATA 301 AGTATCGTAG GCGCTGCCTT AATGAGCGGA AACGCTTGGG CATTGGCCAG TCTCAGGAGA 361 TGAACACACT CTTCCGCTTC TGGTCCTTCT TCCTCCGAGA TCACTTCAAC AAAAAGATGT 421 ATGAGGAGTT CAAGCAGCTG GCTCTGGAGG ACGCCAAAGA AGGCTACAGA TATGGTTTGG 481 AGTGCCTTTT TCGATACTAC AGTTATGGCC TGGAAAAGAA GTTCCGGCTG GACATATTCA 541 AGGATTTTCA GGAGGAAACG GTGAAGGACT ATGAAGCTGG CCAACTGTAT GGGCTGGAGA 601 AGTTCTGGGC CTTCTTGAAA TATTCCAAAG CCAAAAATTT GGACATTGAC CCCAAACTGC 661 AAGAATACCT CGGCAAATTC CGACGTCTTG AAGACTTCCG AGTAGATCCC CCCATGGGTG 721 AGGAGGGCAA CCACAAGCGA CACTCAGTGG TAGCAGGAGG TGGCGGCGGT GAGGGCAGGA 781 AGCGGTGCCC CTCCCAGTCT TCCAGCAGGC CTGCTGCCAT GATCAGCCAA CCCCCTACAC 841 CACCCACCGG CCAGCCTGTC CGGGAAGATG CCAAATGGAC AAGCCAGCAC TCGAACACAC 901 AGACTTTGGG AAAGTGCCCA ACTTACTTGT ACAAAGTtgg cattataaga aagcattgct 961 tatcaatttg ttgcaacgaa c