Construct: ORF ccsbBroadEn_14108

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016940.1_s300c1, BRDN0000393653
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
SLC13A4 (26266)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26266 SLC13A4 solute carrier family 13 me... NM_012450.4 99.8% 2% 12delG;734C>G
2 human 26266 SLC13A4 solute carrier family 13 me... NM_001318192.2 99.7% 2% 12delG;594_596delCAG;737C>G
3 human 26266 SLC13A4 solute carrier family 13 me... XM_011516024.3 92.3% 2.2% (many diffs)
4 human 26266 SLC13A4 solute carrier family 13 me... XM_017011962.1 84.9% 1.7% (many diffs)
5 human 26266 SLC13A4 solute carrier family 13 me... XM_017011963.2 59.3% 3.4% (many diffs)
6 mouse 243755 Slc13a4 solute carrier family 13 (s... NM_172892.3 86% 1.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
186
ORF length:
120
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CCTGCTCAGG GCCTGCTCCG AGTCCGGAAG CTGCTGCTGG TCGTCTGCGT
121CCCGCTCCTG CTGCTGCCTC TGCCCGTCCT CCACCCCAGC AGCGAGGCCT CGTGTGCTTA
181CGTGCTGATC GTGACTGCTG TGTACTGGGT GTCGGAGGCA GTGCCTCTGG GAGCTGCAGC
241CCTGGTGCCG GCCTTCCTTT ACCCGTTCTT CGGAGTCCTC CGGTCCAATG AGGTGGCGGC
301GGAGTACTTC AAGAACACCA CGCTGCTGCT GGTGGGGGTC ATCTGCGTGG CGGCTGCCGT
361GGAGAAGTGG AACCTGCATA AGCGCATTGC TCTGCGCATG GTCTTGATGG CCGGAGCCAA
421GCCGGGCATG CTGCTGCTCT GCTTCATGTG CTGTACCACG TTGCTGTCCA TGTGGCTGTC
481CAACACCTCC ACCACCGCCA TGGTGATGCC CATCGTGGAG GCCGTGCTGC AGGAGCTGGT
541CAGTGCTGAG GACGAGCAGC TCGTGGCGGG CAACTCCAAC ACCGAAGAGG CCGAACCCAT
601CAGTCTGGAT GTAAAGAACA GCCAACCTTC TCTGGAACTC ATCTTTGTCA ATGAAGAGTC
661CAACGCAGAC CTCACCACTC TGATGCACAA CGAGAACCTG AATGGTGTGC CCTCGATCAC
721CAACCCCATC AAAACTGCAA ACCAACACCA GGGCAAGAAG CAACACCCAT CCCAGGAAAA
781GCCACAAGTC CTGACCCGCA GCCCCAGGAA GCAGAAGCTG AACAGAAAGT ACAGGTCCCA
841CCATGACCAG ATGATCTGCA AGTGCCTCTC CCTGAGCATA TCCTACTCCG CTACCATTGG
901CGGCCTGACC ACCATCATCG GCACCTCCAC CAGCCTCATC TTCCTGGAAC ACTTCAACAA
961CCAGTATCCA GCCGCAGAGG TGGTGAACTT TGGCACCTGG TTCCTCTTCA GCTTCCCCAT
1021ATCCCTCATC ATGCTGGTGG TCAGCTGGTT CTGGATGCAC TGGCTGTTCC TGGGCTGCAA
1081TTTTAAAGAG ACCTGCTCTC TGAGCAAGAA GAAGAAGACC AAAAGGGAAC AGTTGTCAGA
1141GAAGAGGATC CAAGAAGAAT ATGAAAAACT GGGAGACATT AGCTACCCAG AAATGGTGAC
1201TGGATTTTTC TTCATCCTGA TGACCGTACT GTGGTTTACC CGGGAGCCTG GCTTTGTCCC
1261TGGCTGGGAT TCTTTCTTTG AAAAGAAAGG CTACCGTACT GATGCCACAG TCTCTGTCTT
1321CCTTGGCTTC CTCCTCTTCC TCATTCCAGC GAAGAAGCCC TGCTTTGGGA AAAAGAATGA
1381TGGAGAGAAC CAGGAGCACT CACTGGGGAC CGAGCCCATC ATCACGTGGA AGGACTTCCA
1441GAAGACCATG CCCTGGGAGA TTGTCATTCT GGTTGGGGGA GGCTATGCTC TGGCTTCTGG
1501TAGCAAGAGC TCTGGCCTCT CTACATGGAT TGGGAACCAG ATGTTGTCCC TGAGCAGCCT
1561CCCACCGTGG GCTGTCACCC TGCTGGCATG CATCCTCGTG TCCATTGTCA CTGAGTTTGT
1621GAGCAACCCA GCAACCATCA CCATCTTCCT GCCCATCCTG TGCAGCCTGT CTGAAACGCT
1681GCACATTAAC CCCCTCTACA CCCTGATCCC AGTCACCATG TGCATCTCCT TTGCAGTGAT
1741GCTGCCTGTG GGCAATCCCC CTAATGCCAT CGTCTTCAGC TATGGGCACT GCCAGATCAA
1801AGATATGGTG AAAGCTGGCC TGGGAGTCAA CGTTATTGGA CTGGTGATAG TAATGGTGGC
1861CATCAACACC TGGGGAGTTA GCCTCTTCCA CCTGGACACT TACCCAGCAT GGGCGAGGGT
1921CAGCAACATC ACTGATCAAG CCTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa
1981gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)