Transcript: Mouse NM_172892.3

Mus musculus solute carrier family 13 (sodium/sulfate symporters), member 4 (Slc13a4), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Slc13a4 (243755)
Length:
3426
CDS:
671..2548

Additional Resources:

NCBI RefSeq record:
NM_172892.3
NBCI Gene record:
Slc13a4 (243755)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_172892.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000069845 GTGTCCATTGTCACGGAGTTT pLKO.1 2201 CDS 100% 4.950 6.930 N Slc13a4 n/a
2 TRCN0000069844 CGTTACCATGTCAATCTCCTT pLKO.1 2314 CDS 100% 2.640 2.112 N Slc13a4 n/a
3 TRCN0000069843 GCTGTGGAGAAGTGGAATTTA pLKO.1 962 CDS 100% 15.000 10.500 N Slc13a4 n/a
4 TRCN0000069846 CCAAGAACTGAACAAGAAGAA pLKO.1 1411 CDS 100% 4.950 3.465 N Slc13a4 n/a
5 TRCN0000069847 CCTCTTCCACTTGGATGCTTT pLKO.1 2485 CDS 100% 4.950 3.465 N Slc13a4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_172892.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14108 pDONR223 100% 86% 1.5% None (many diffs) n/a
2 ccsbBroad304_14108 pLX_304 0% 86% 1.5% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000469642 ATAAGGCCGCCTTCACTAAACTGA pLX_317 21.2% 86% 1.5% V5 (not translated due to prior stop codon) (many diffs) n/a
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