Construct: ORF ccsbBroadEn_14128

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001587.1_s300c1, BRDN0000388483
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC40A1 (30061)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 30061 SLC40A1 solute carrier family 40 me... NM_014585.5 99.8% 99.6% 563C>T;1709delT
2 human 30061 SLC40A1 solute carrier family 40 me... XM_005246505.2 92.8% 92.6% 0_1ins120;443C>T;1589delT
3 human 30061 SLC40A1 solute carrier family 40 me... XM_017003938.2 92.8% 92.6% 0_1ins120;443C>T;1589delT
4 mouse 53945 Slc40a1 solute carrier family 40 (i... NM_016917.2 86.4% 89.8% (many diffs)
5 mouse 53945 Slc40a1 solute carrier family 40 (i... XM_006496137.2 86.4% 89.8% (many diffs)
6 mouse 53945 Slc40a1 solute carrier family 40 (i... XM_017321709.1 86.4% 89.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1779
ORF length:
1713
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CAGGGCGGGA GATCACAACC GCCAGAGAGG ATGCTGTGGA TCCTTGGCCG
121ACTACCTGAC CTCTGCAAAA TTCCTTCTCT ACCTTGGTCA TTCTCTCTCT ACTTGGGGAG
181ATCGGATGTG GCACTTTGCG GTGTCTGTGT TTCTGGTAGA GCTCTATGGA AACAGCCTCC
241TTTTGACAGC AGTCTACGGG CTGGTGGTGG CAGGGTCTGT TCTGGTCCTG GGAGCCATCA
301TCGGTGACTG GGTGGACAAG AATGCTAGAC TTAAAGTGGC CCAGACCTCG CTGGTGGTAC
361AGAATGTTTC AGTCATCCTG TGTGGAATCA TCCTGATGAT GGTTTTCTTA CATAAACATG
421AGCTTCTGAC CATGTACCAT GGATGGGTTC TCACTTCCTG CTATATCCTG ATCATCACTA
481TTGCAAATAT TGCAAATTTG GCCAGTACTG CTACTGCAAT CACAATCCAA AGGGATTGGA
541TTGTTGTTGT TGCAGGAGAA GACAGAAGCA AACTAGCAAA TATGAATGCC ACAATACGAA
601GGATTGACCA GTTAACCAAC ATCTTAGTCC CCATGGCTGT TGGCCAGATT ATGACATTTG
661GCTCCCCAGT CATCGGCTGT GGCTTTATTT CGGGATGGAA CTTGGTATCC ATGTGCGTGG
721AGTACGTTCT GCTCTGGAAG GTTTACCAGA AAACCCCAGC TCTAGCTGTG AAAGCTGGTC
781TTAAAGAAGA GGAAACTGAA TTGAAACAGC TGAATTTACA CAAAGATACT GAGCCAAAAC
841CCCTGGAGGG AACTCATCTA ATGGGTGTGA AAGACTCTAA CATCCATGAG CTTGAACATG
901AGCAAGAGCC TACTTGTGCC TCCCAGATGG CTGAGCCCTT CCGTACCTTC CGAGATGGAT
961GGGTCTCCTA CTACAACCAG CCTGTGTTTC TGGCTGGCAT GGGTCTTGCT TTCCTTTATA
1021TGACTGTCCT GGGCTTTGAC TGCATCACCA CAGGGTACGC CTACACTCAG GGACTGAGTG
1081GTTCCATCCT CAGTATTTTG ATGGGAGCAT CAGCTATAAC TGGAATAATG GGAACTGTAG
1141CTTTTACTTG GCTACGTCGA AAATGTGGTT TGGTTCGGAC AGGTCTGATC TCAGGATTGG
1201CACAGCTTTC CTGTTTGATC TTGTGTGTGA TCTCTGTATT CATGCCTGGA AGCCCCCTGG
1261ACTTGTCCGT TTCTCCTTTT GAAGATATCC GATCAAGGTT CATTCAAGGA GAGTCAATTA
1321CACCTACCAA GATACCTGAA ATTACAACTG AAATATACAT GTCTAATGGG TCTAATTCTG
1381CTAATATTGT CCCGGAGACA AGTCCTGAAT CTGTGCCCAT AATCTCTGTC AGTCTGCTGT
1441TTGCAGGCGT CATTGCTGCT AGAATCGGTC TTTGGTCCTT TGATTTAACT GTGACACAGT
1501TGCTGCAAGA AAATGTAATT GAATCTGAAA GAGGCATTAT AAATGGTGTA CAGAACTCCA
1561TGAACTATCT TCTTGATCTT CTGCATTTCA TCATGGTCAT CCTGGCTCCA AATCCTGAAG
1621CTTTTGGCTT GCTCGTATTG ATTTCAGTCT CCTTTGTGGC AATGGGCCAC ATTATGTATT
1681TCCGATTTGC CCAAAATACT CTGGGAAACA AGCTCTTTGC TTGCGGTCCT GATGCAAAAG
1741AAGTTAGGAA GGAAAATCAA GCAAATACAT CTGTGTTTGC CCAACTTTCT TGTACAAAGT
1801tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)