Construct: ORF ccsbBroadEn_14181

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009587.1_s300c1, BRDN0000385090
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
INTS11 (54973)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54973 INTS11 integrator complex subunit 11 XM_011541650.2 63.3% 63.2% 1_522del;779T>C
2 human 54973 INTS11 integrator complex subunit 11 XM_017001557.1 63.3% 63.2% 1_522del;779T>C
3 human 54973 INTS11 integrator complex subunit 11 XM_017001558.1 63.3% 63.2% 1_522del;779T>C
4 human 54973 INTS11 integrator complex subunit 11 NM_001256463.2 60.4% 60.3% 1_591del;848T>C
5 human 54973 INTS11 integrator complex subunit 11 NM_001256462.1 60% 59.9% 1_600del;857T>C
6 human 54973 INTS11 integrator complex subunit 11 NM_001256460.1 52.8% 52.7% 1_807del;1064T>C
7 human 54973 INTS11 integrator complex subunit 11 NM_017871.6 50.2% 50.1% 1_894del;1151T>C
8 human 54973 INTS11 integrator complex subunit 11 NM_001256456.1 49.7% 49.6% 1_912del;1169T>C
9 human 54973 INTS11 integrator complex subunit 11 XM_011541648.1 48.4% 48.3% 1_960del;1217T>C
10 human 54973 INTS11 integrator complex subunit 11 XM_011541647.1 45.7% 45.6% 1_1074del;1331T>C
11 mouse 71957 Ints11 integrator complex subunit 11 XM_006539195.2 85.2% 95.3% (many diffs)
12 mouse 71957 Ints11 integrator complex subunit 11 XM_006539194.2 72.8% 81.5% (many diffs)
13 mouse 71957 Ints11 integrator complex subunit 11 XM_011250335.2 58.7% 65.7% (many diffs)
14 mouse 71957 Ints11 integrator complex subunit 11 XM_006539192.2 54% 60.5% (many diffs)
15 mouse 71957 Ints11 integrator complex subunit 11 NM_028020.3 42.8% 48% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
972
ORF length:
906
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TGAGTTCAAG CACATCAAGG CCTTCGACCG GGCTTTTGCT GACAACCCAG
121GACCGATGGT TGTGTTTGCC ACGCCAGGAA TGCTGCACGC TGGGCAGTCC CTGCAGATCT
181TCCGGAAATG GGCCGGAAAC GAAAAGAACA TGGTCATCAT GCCCGGCTAC TGCGTGCAGG
241GCACCGTCGG CCACAAGATC CTCAGCGGGC AGCGGAAGCT CGAGATGGAG GGGCGGCAGG
301TGCTGGAGGT CAAGATGCAG GCGGAGTACA TGTCATTCAG CGCACACGCG GACGCCAAGG
361GCATCATGCA GCTGGTGGGC CAGGCAGAGC CGGAGAGCGT GCTGCTGGTG CATGGCGAGG
421CCAAGAAGAT GGAGTTCCTG AAGCAGAAGA TCGAGCAGGA GCTCCGGGTC AACTGCTACA
481TGCCGGCCAA TGGCGAGACG GTGACGCTGC CCACAAGCCC CAGCATCCCC GTAGGCATCT
541CGCTGGGGCT GCTGAAGCGG GAGATGGCGC AGGGGCTGCT CCCTGAGGCC AAGAAGCCTC
601GGCTCCTGCA CGGCACCCTG ATCATGAAGG ACAGCAACTT CCGGCTGGTG TCCTCAGAGC
661AAGCCCTCAA AGAGCTGGGT CTGGCTGAGC ACCAGCTGCG CTTCACCTGC CGCGTGCACC
721TGCATGACAC ACGCAAGGAG CAGGAGACGG CATTGCGCGT CTACAGCCAC CTCAAGAGCG
781TCCTGAAGGA CCACTGTGTG CAGCACCTCC CAGACGGCTC TGTGACTGTG GAGTCCGTCC
841TCCTCCAGGC CGCCGCCCCT TCTGAGGACC CAGGCACCAA GGTGCTGCTG GTCTCCTGGA
901CCTACCAGGA CGAGGAGCTG GGGAGCTTCC TCACATCTCT GCTGAAGAAG GGCCTCCCCC
961AGGCCCCCAG CTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1021caatttgttg caacgaac

Download FASTA (ORF) (Full)

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