Construct: ORF ccsbBroadEn_14209

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013658.1_s300c1, BRDN0000389796
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KDM3A (55818)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55818 KDM3A lysine demethylase 3A NM_001146688.1 90.1% 90% (many diffs)
2 human 55818 KDM3A lysine demethylase 3A NM_018433.6 90.1% 90% (many diffs)
3 human 55818 KDM3A lysine demethylase 3A XM_024452994.1 90% 89.9% (many diffs)
4 human 55818 KDM3A lysine demethylase 3A XM_024452995.1 90% 89.9% (many diffs)
5 human 55818 KDM3A lysine demethylase 3A XM_017004494.1 68.6% 68.5% (many diffs)
6 human 55818 KDM3A lysine demethylase 3A XM_024452996.1 68.5% 68.4% (many diffs)
7 human 55818 KDM3A lysine demethylase 3A XM_006712051.4 40.2% 40.1% 0_1ins1980;1594G>A;1597_1983del
8 human 55818 KDM3A lysine demethylase 3A XM_024452997.1 40.1% 40.1% 0_1ins1980;1594G>A;1597_1989del
9 mouse 104263 Kdm3a lysine (K)-specific demethy... NM_001038695.3 80% 81.8% (many diffs)
10 mouse 104263 Kdm3a lysine (K)-specific demethy... NM_173001.3 80% 81.8% (many diffs)
11 mouse 104263 Kdm3a lysine (K)-specific demethy... XM_006505264.3 80% 81.8% (many diffs)
12 mouse 104263 Kdm3a lysine (K)-specific demethy... XM_006505265.1 60.7% 62.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3642
ORF length:
3576
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGT GCTCACGCTC GGAGAAAGTT GGCCGGTATT GGTGGGGAGG AGGTTTCTCA
121GTCTGTCCGC AGCCGACGGC AGCGATGGCA GCCACGACAG CTGGGACGTG GAGCGCGTCG
181CCGAGTGGCC CTGGCTCTCC GGGACCATTC GAGCTGTTTC CCACACCGAC GTTACCAAGA
241AGGATCTGAA GGTGTGTGTG GAATTTGATG GGGAATCTTG GAGGAAAAGA AGATGGATAG
301AAGTCTACAG CCTTCTAAGG AGAGCATTTT TAGTAGAACA TAATTTGGTT TTAGCTGAAC
361GAAAGTCACC TGAAATTTCT GAACGAATTG TACAGTGGCC TGCAATAACG TACAAACCTC
421TGTTGGACAA AGCTGGTTTG GGATCCATAA CTTCTGTTCG CTTTCTGGGA GATCAACAAA
481GAGTATTTCT TTCTAAAGAC CTTTTGAAGC CTATACAGGA TGTAAACAGT CTTCGACTTT
541CTCTTACGGA TAATCAGATT GTCAGTAAAG AATTTCAAGC TTTGATTGTG AAGCATTTAG
601ATGAAAGCCA TCTTTTAAAA GGTGACAAAA ACTTAGTTGG TTCAGAAGTA AAAATTTATA
661GCTTGGACCC ATCTACTCAG TGGTTTTCAG CAACCGTTGT AAATGGAAAC CCAGCATCAA
721AAACTCTTCA AGTCAACTGT GAGGAGATTC CAGCACTGAA AATTGTTGAT CCGTCACTGA
781TTCATGTTGA AGTTGTACAC GATAACCTTG TGACATGTGG TAATTCTGCA AGAATTGGAG
841CTGTAAAACG CAAGTCTTCT GAGAATAATG GAACCCTGGT TTCCAAACAA GCAAAATCTT
901GCTCTGAGGC CTCTCCCAGT ATGTGTCCTG TGCAGTCTGT ACCTACAACA GTTTTTAAGG
961AGATACTGCT TGGCTGTACT GCAGCAACTC CACCTAGTAA GGACCCAAGA CAGCAAAGTA
1021CTCCCCAGGC TGCCAACTCT CCACCTAACC TTGGAGCAAA AATTCCTCAA GGATGTCATA
1081AACAAAGTTT ACCAGAGGAA ATTTCTTCCT GTCTAAATAC AAAGTCTGAA GCTCTGAGAA
1141CAAAACCAGA TGTCTGCAAA GCAGGGTTGC TCTCAAAGTC CTCTCAGATT GGAACTGGAG
1201ACTTGAAAAT TCTGACTGAG CCAAAAGGCA GCTGTACTCA GCCTAAGACA AACACTGATC
1261AGGAAAACAG ATTGGAGTCT GTTCCACAAG CATTGACTGG CCTTCCTAAG GAGTGCTTAC
1321CTACAAAGGC TTCTTCTAAG GCAGAATTGG AAATTGCCAA TCCTCCTGAA CTGCAGAAGC
1381ACCTAGAACA TGCACCTTCC CCATCGGATG TTTCAAATGC ACCAGAAGTG AAAGCAGGTG
1441TCAATAGTGA TAGCCCTAAT AACTGTTCAG GAAAAAAGGT AGAACCTTCA GCTTTAGCTT
1501GCCGATCACA GAATTTAAAG GAATCTTCAG TAAAAGTAGA TAATGAAAGC TGTTGTTCAA
1561GAAGCAACAA TAAAATCCAG AATGCCCCAT CCAGGAAGTC GGTTTTGACA GACCCAGCTA
1621AACTCAAAAA GCTGCAACAG AGTGGCGAGG CCTTCGTACA GGATGATTCT TGTGTGAACA
1681TCGTGGCACA GTTGCCTAAA TGCCGAGAGT GTCGCTTGGA CAGTCTCCGC AAGGATAAGG
1741AGCAACAGAA GGACTCACCT GTGTTTTGCC GCTTCTTTCA CTTCAGGAGG TTACAATTCA
1801ACAAACATGG TGTGTTGCGG GTAGAAGGCT TCTTAACACC AAACAAGTAT GACAATGAAG
1861CAATTGGCTT GTGGTTACCT TTAACCAAAA ACGTTGTGGG GATTGATTTG GACACAGCAA
1921AGTACATCTT GGCCAACATT GGAGACCACT TCTGTCAAAT GGTGATTTCT GAAAAGGAAG
1981CTATGTCAAC TATTGAGCCA CACAGACAGG TTGCTTGGAA GCGAGCTGTC AAAGGTGTTC
2041GAGAAATGTG TGATGTGTGC GACACCACCA TCTTCAACCT GCACTGGGTG TGTCCTCGGT
2101GTGGGTTTGG AGTATGTGTG GACTGCTACC GGATGAAGAG AAAGAATTGC CAACAGGGTG
2161CTGCTTACAA GACTTTCTCT TGGCTAAAAT GTGTGAAGAG TCAGATACAT GAACCAGAGA
2221ACTTAATGCC CACACAGATC ATTCCTGGAA AAGCACTCTA TGATGTTGGA GACATTGTTC
2281ATTCTGTAAG AGCGAAATGG GGAATAAAGG CAAACTGCCC TTGTTCAAAC AGGCAATTCA
2341AACTCTTTTC AAAGCCAGCC TCAAAGGAAG ACCTAAAACA GACTTCTTTA GCTGGAGAAA
2401AACCGACTCT TGGTGCAGTG CTCCAGCAGA ATCCCTCAGT GTTGGAGCCA GCAGCTGTGG
2461GTGGGGAAGC AGCCTCCAAG CCAGCCGGCA GCATGAAGCC TGCCTGTCCA GCCAGCACAT
2521CTCCTCTAAA CTGGCTGGCC GACCTAACCA GCGGGAATGT CAACAAGGAA AACAAGGAAA
2581AACAACCAAC AATGCCAATT TTAAAGAATG AAATCAAATG CCTTCCACCC CTCCCACCTT
2641TAAGCAAATC CAGCACAGTC CTCCATACGT TTAACAGCAC AATTTTGACA CCCGTAAGCA
2701ACAACAATTC TGGTTTCCTC CGGAATCTCT TGAATTCTTC TACAGGAAAG ACAGAAAATG
2761GACTCAAGAA TACACCAAAA ATCCTTGATG ACATCTTTGC CTCTTTGGTG CAAAATAAGA
2821CGACTTCTGA TTTATCTAAG AGGCCTCAAG GACTAACCAT CAAGCCCAGC ATTCTGGGCT
2881TTGACACTCC TCACTATTGG CTTTGTGATA ATCGCTTGCT GTGCTTGCAA GACCCCAACA
2941ATAAGAGCAA CTGGAATGTG TTTAGGGAGT GCTGGAAACA AGGGCAGCCA GTGATGGTGT
3001CTGGAGTGCA TCATAAATTG AACTCTGAAC TTTGGAAACC TGAATCCTTC AGGAAAGAGT
3061TTGGTGAGCA GGAAGTAGAC CTAGTTAATT GTAGGACCAA TGAAATCATC ACAGGAGCCA
3121CAGTAGGAGA CTTCTGGGAT GGATTTGAAG ATGTTCCAAA TCGTTTGAAA AATGAAAAAG
3181AACCAATGGT GTTGAAACTT AAGGACTGGC CACCAGGAGA AGATTTTAGA GATATGATGC
3241CTTCCAGGTT TGATGATCTG ATGGCCAACA TTCCACTGCC CGAGTACACA AGGCGAGATG
3301GCAAACTGAA TTTGGCCTCT AGGCTGCCAA ACTACTTTGT TCGGCCAGAT CTGGGCCCCA
3361AGATGTATAA TGCTTATGGA TTAATCACTC CTGAAGATCG GAAATATGGA ACAACAAATC
3421TTCACTTAGA TGTATCTGAT GCAGCTAATG TCATGGTCTA TGTGGGAATT CCCAAAGGAC
3481AGTGTGAGCA AGAAGAAGAA GTCCTTAAGA CCATCCAAGA TGGAGATTCT GACGAACTCA
3541CAATAAAGCG ATTTATTGAA GGAAAAGAGA AGCCAGGAGC ACTGTGGCAC ATATATGCTG
3601CAAAGGACAC GGAGAAGATA AGGGAATTTC TTAAAAAGAT ATACCCAACT TTCTTGTACA
3661AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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