Construct: ORF ccsbBroadEn_14223

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017997.1_s300c1, BRDN0000389105
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PARP6 (56965)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_017022418.2 76.3% 70.6% 1024_1093del;1155C>A;1160_1425del
2 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_011521805.2 73.1% 67.7% (many diffs)
3 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323519.2 59.4% 55.3% (many diffs)
4 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323521.2 59.4% 55.3% (many diffs)
5 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323523.2 59.4% 55.3% (many diffs)
6 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323524.2 59.4% 55.3% (many diffs)
7 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323526.2 59.4% 55.3% (many diffs)
8 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449998.1 59.4% 55.3% (many diffs)
9 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323515.2 59.3% 55.2% (many diffs)
10 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323516.2 59.3% 55.2% (many diffs)
11 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323530.2 59.3% 55.2% (many diffs)
12 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449997.1 59.3% 55.2% (many diffs)
13 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323522.2 57.5% 53.5% (many diffs)
14 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323532.2 57.5% 53.5% (many diffs)
15 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_020214.4 57.5% 53.5% (many diffs)
16 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449996.1 57.5% 53.5% (many diffs)
17 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323525.2 57.4% 53.4% (many diffs)
18 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323528.2 57.4% 53.4% (many diffs)
19 human 56965 PARP6 poly(ADP-ribose) polymerase... NM_001323531.2 57.4% 53.4% (many diffs)
20 human 56965 PARP6 poly(ADP-ribose) polymerase... XM_024449995.1 57.4% 53.4% (many diffs)
21 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_429467.4 46.1% (many diffs)
22 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_001751363.1 43.8% (many diffs)
23 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957665.1 43.1% (many diffs)
24 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136603.2 42.8% 1_910del;1995C>A;2000_2542del
25 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136599.2 42.6% (many diffs)
26 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136608.2 41.7% (many diffs)
27 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957661.1 41.5% 1_987del;2072C>A;2077_2619del
28 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_001751361.2 41.4% (many diffs)
29 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136611.2 40.9% 1_1026del;2111C>A;2116_2658del
30 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957660.1 40.6% (many diffs)
31 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957659.1 40.5% (many diffs)
32 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136607.2 40% (many diffs)
33 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136610.2 39.9% (many diffs)
34 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136606.2 39.2% 1_1138del;2223C>A;2228_2770del
35 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957664.1 38.5% (many diffs)
36 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136594.2 38.3% (many diffs)
37 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136604.2 38.1% (many diffs)
38 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136596.2 38% (many diffs)
39 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957663.1 37.3% (many diffs)
40 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136605.2 36.7% (many diffs)
41 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_002957662.1 36.5% (many diffs)
42 human 56965 PARP6 poly(ADP-ribose) polymerase... NR_136609.2 35.9% (many diffs)
43 human 56965 PARP6 poly(ADP-ribose) polymerase... XR_001751362.2 35.5% (many diffs)
44 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_006511380.3 67.5% 67.9% (many diffs)
45 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NM_029922.3 56.1% 55.3% (many diffs)
46 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313533.1 56.1% 55.3% (many diffs)
47 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242800.1 56% 55.2% (many diffs)
48 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313532.1 56% 55.2% (many diffs)
49 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242799.1 55% 55.3% (many diffs)
50 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313531.1 55% 55.3% (many diffs)
51 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NM_001205239.1 54.3% 53.5% (many diffs)
52 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313530.1 54.3% 53.5% (many diffs)
53 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242798.1 54.2% 53.4% (many diffs)
54 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313529.1 54.2% 53.4% (many diffs)
55 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242797.1 53.4% 53.7% (many diffs)
56 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313528.1 53.4% 53.7% (many diffs)
57 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_006511375.2 53.3% 53.6% (many diffs)
58 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242795.1 53.3% 53.6% (many diffs)
59 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_011242796.1 53.3% 53.6% (many diffs)
60 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313527.1 53.3% 53.6% (many diffs)
61 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XM_017313534.1 49.5% 48.5% (many diffs)
62 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NR_038074.1 39.7% (many diffs)
63 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778988.1 38.9% (many diffs)
64 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_870763.1 38.9% (many diffs)
65 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778989.1 38.3% (many diffs)
66 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778987.1 38.2% (many diffs)
67 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_870762.1 36.8% (many diffs)
68 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_870764.1 36.2% (many diffs)
69 mouse 67287 Parp6 poly (ADP-ribose) polymeras... NR_038075.1 36.1% (many diffs)
70 mouse 67287 Parp6 poly (ADP-ribose) polymeras... XR_001778990.1 35.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1155
ORF length:
1089
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TACATCCCAA CAATGGAAAC ATCTGAGCAA TGATTTCTTG AAGACCCAGC
121AGGAGAAGAG GCACAGTTGG TTCAAGGCAA GTGGTACCAT CAAGAAGTTC CGAGCTGGCC
181TCAGCATCTT TTCACCCATC CCCAAGTCTC CCAGTTTCCC TATCATACAG GACTCCATGC
241TGAAAGGCAA ACTAGGTGTA CCAGAGCTTC GGGTTGGGCG CCTCATGAAC CGTTCCATCT
301CCTGTACCAT GAAGAACCCC AAAGTGGAAG TGTTTGGCTA CCCTCCCAGC CCCCAGGTCA
361GTGGTCACTG CAAGAACATT CCCACTCTGG AGTATGGATT CCTCGTTCAG ATCATGAAGT
421ATGCAGAACA GAGGATTCCA ACATTGAATG AGTACTGTGT GGTGTGTGAT GAGCAGCATG
481TCTTCCAAAA TGGATCTATG CTGAAGCCAG CTGTCTGTAC TCGTGAACTA TGCGTTTTCT
541CCTTCTACAC ACTGGGCGTC ATGTCTGGAG CTGCAGAGGA GGTGGCCACT GGAGCAGAGG
601TGGTGGATCT GCTGGTGGCC ATGTGTAGGG CAGCTTTAGA GTCCCCTAGA AAGAGCATCA
661TCTTTGAGCC TTATCCCTCT GTGGTGGACC CCACTGATCC CAAGACTCTG GCCTTTAACC
721CTAAGAAGAA GAATTATGAG CGGCTTCAGA AAGCTCTGGA TAGTGTGATG TCTATTCGGG
781AGATGACCCA GGGCTCATAT TTGGAAATCA AGAAACAGAT GGACAAGTTG GATCCCCTGG
841CCCATCCTCT CCTGCAGTGG ATCATCTCTA GCAACAGGTC ACACATTGTC AAACTACCTC
901TCAGCAGGCT GAAGTTCATG CACACCTCAC ACCAGTTCCT CCTGCTGAGC AGCCCTCCTG
961CCAAGGAGGC TCGGTTCCGG ACCGCCAAGA AGCTCTATGG CAGCACCTTT GCCTTCCATG
1021GGTCCCACAT TGAGAACTGG CATTCGATCC TGCGCAATGG GCTGGTCAAT GCATCCTACA
1081CCAAACTGCA GGAATGGGAA AAGGACAGCA CAGGATGCCC TCCAAGGATG AGCTGGTCCA
1141GAGATACAAA AGGATGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1201tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)