Construct: ORF ccsbBroadEn_14234

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003465.1_s300c1, BRDN0000386431
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF213 (57674)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57674 RNF213 ring finger protein 213 XM_017024905.2 10.3% 10.3% 1_13236del;14759T>C
2 human 57674 RNF213 ring finger protein 213 NM_001256071.3 9.7% 9.7% 1_14094del;15617T>C
3 human 57674 RNF213 ring finger protein 213 XM_005257545.4 9.6% 9.6% 1_14241del;15764T>C
4 human 57674 RNF213 ring finger protein 213 XM_005257546.4 9.6% 9.6% 1_14241del;15764T>C
5 human 57674 RNF213 ring finger protein 213 XM_006721995.3 9.6% 9.6% 1_14241del;15764T>C
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1593
ORF length:
1527
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TAATCTCATC AGCCAAGATA AGCGTATCAG CTCTAACCCT GTGGCCAAAA
121TAATATATGG TGACCCAGTG ACCTTCCTGC CCCACCTGCC CCGGAAAAGT GTGGTCCATT
181GCTCTAAGAT TTGGAGCTGC AGGAAAAGAA TTACAGTTGA GTACCTCCAG CACATTGTGG
241AACAGAAAAA TGGCAAAGAA AGAGTGCCCA TCCTCTGGCA TTTCCTGCAG AAGGAAGCAG
301AGCTGAGGCT GGTAAAGTTC CTGCCTGAGA TTTTGGCCTT GCAAAGGGAT CTAGTGAAGC
361AGTTCCAGAA CGTCCAGCAA GTTGAATACA GCTCCATCAG AGGCTTCCTC AGCAAGCACA
421GCTCAGATGG GTTGAGGCAG CTGCTTCACA ACAGGATCAC AGTCTTTCTG TCCACATGGA
481ACAAACTGAG GAGATCGCTT GAGACGAACG GTGAGATCAA CCTACCCAAA GACTACTGCA
541GCACTGACTT GGATCTGGAC ACTGAGTTTG AGATCCTCTT GCCACGCCGA CGGGGCCTGG
601GCCTCTGTGC TACCGCTCTC GTCAGCTACT TGATTCGCCT ACACAATGAA ATTGTCTACG
661CCGTGGAAAA ACTCTCCAAG GAAAACAACA GCTATTCCGT GGATGCCGCC GAGGTCACTG
721AACTGCATGT CATCAGTTAT GAAGTGGAGC GGGACCTGAC TCCACTGATT CTCTCCAACT
781GCCAGTACCA GGTGGAGGAG GGCAGAGAGA CCGTGCAGGA GTTCGATCTG GAGAAGATTC
841AGCGGCAGAT CGTCAGCCGC TTCCTCCAGG GCAAGCCCCG GCTGAGCCTC AAGGGAATAC
901CCACTCTGGT GTACAGACAC GACTGGAACT ATGAACATCT CTTTATGGAC ATCAAGAACA
961AAATGGCACA GGACTCCCTC CCCAGCTCGG TCATTAGTGC CATCAGTGGA CAGCTGCAGT
1021CCTACAGCGA TGCCTGTGAA GTGCTGTCTG TCGTAGAAGT CACTCTGGGG TTTCTGAGCA
1081CAGCTGGTGG GGATCCAAAC ATGCAGCTGA ATGTGTATAC TCAAGACATC CTGCAAATGG
1141GTGATCAGAC GATTCACGTG TTAAAGGCCT TAAACAGATG CCAGTTAAAA CACACCATTG
1201CCCTCTGGCA GTTCCTGTCT GCTCATAAGT CTGAACAGCT GCTGCGGCTG CACAAAGAGC
1261CATTTGGGGA AATCAGTTCA AGGTACAAAG CGGATCTGAG CCCGGAAAAT GCTAAGCTCC
1321TCAGCACATT CCTAAATCAG ACTGGCCTAG ACGCCTTCCT GCTAGAGCTG CACGAAATGA
1381TAATCTTGAA ACTAAAGAAC CCCCAAACCC AAACCGAGGA GCGCTTCCGC CCTCAGTGGA
1441GCCTGAGAGA CACTCTCGTA AGTTACATGC AAACTAAAGA AAGTGAAATT CTTCCTGAAA
1501TGGCATCTCA GTTCCCAGAA GAGATACTGC TCGCCAGCTG TGTCTCAGTG TGGAAAACAG
1561CTGCTGTGCT GAAATGGAAT CGAGAAACGA GATACCCAAC TTTCTTGTAC AAAGTtggca
1621ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)