Construct: ORF ccsbBroadEn_14238
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010379.1_s300c1, BRDN0000388590
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABRACL (58527)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 58527 | ABRACL | ABRA C-terminal like | NM_021243.3 | 98.7% | 98.7% | 212_214delATG |
| 2 | human | 58527 | ABRACL | ABRA C-terminal like | XM_017011151.1 | 98.7% | 98.7% | 212_214delATG |
| 3 | mouse | 73112 | Abracl | ABRA C-terminal like | NM_028440.1 | 87.2% | 91.3% | (many diffs) |
| 4 | mouse | 73112 | Abracl | ABRA C-terminal like | XM_011243210.2 | 87.2% | 91.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 306
- ORF length:
- 240
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TGTGGATCAC GAGGTTAACC TCTTAGTGGA GGAAATTCAT CGTTTGGGTT 121 CAAAAAATGC TGATGGAAAG TTAAGCGTGA AATTTGGGGT CCTCTTCCGT GATGATAAAT 181 GTGCCAACCT CTTTGAAGCA TTGGTAGGAA CTCTTAAAGC TGCAAAACGA AGGAAGATTG 241 TAACATATCC AGGAGAGCTG CTTCTGCAAG GTGTTCATGA TGTTGACATT ATATTACTGC 301 AAGATTACCC AACTTCCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 361 gttgcaacga ac