Construct: ORF ccsbBroadEn_14257
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006920.1_s300c1, BRDN0000389687
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SMIM7 (79086)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79086 | SMIM7 | small integral membrane pro... | XR_244083.3 | 13.1% | (many diffs) | |
| 2 | human | 79086 | SMIM7 | small integral membrane pro... | XR_244086.4 | 10.1% | (many diffs) | |
| 3 | human | 79086 | SMIM7 | small integral membrane pro... | XR_244084.4 | 10% | (many diffs) | |
| 4 | human | 79086 | SMIM7 | small integral membrane pro... | XR_001753760.2 | 9.8% | (many diffs) | |
| 5 | human | 79086 | SMIM7 | small integral membrane pro... | XR_001753759.2 | 8.8% | 1_655del;675C>N;809_1717del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 219
- ORF length:
- 153
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC GAGTCTCCAT TCCTNCATTC CTGATGACTT CAAGAATGTT TTTGACCAGA 121 AAACCGACAA CCTTCCCAGA AAGTCCAAGC TCGTGGTGGG TGGAAAAGTG TTCGCCGAGG 181 TGTGCATGGT TTCCCAGCCA CGTCCCTGTT TTCAAAGATA CCCAACTTTC TTGTACAAAG 241 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac