Construct: ORF ccsbBroadEn_14263
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012302.1_s300c1, BRDN0000396697
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TANGO6 (79613)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79613 | TANGO6 | transport and golgi organiz... | NM_024562.2 | 56.9% | 56.8% | 1_1413del;3281C>A |
| 2 | human | 79613 | TANGO6 | transport and golgi organiz... | XM_011523327.3 | 41.8% | 39.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1935
- ORF length:
- 1869
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA TTCCCTGCTT CCAGTCCTGG GAGTGCTTTT TCTTCTCTAC TGTTTTACTA 121 AGCAGAGTGT GTCTCACATA AGGTCACTTT GCCAAGAAAT CTTATTATGG ATTCTGGGGA 181 AGCTGGAAAG GAAGAAGGCA ATTGCCAGCC TGAAAGGATT TGCAGGGTTG GACAAAGCTG 241 TGCCCTCTCT CCATTCTCTG TGTCAGTTTA GAGTTGCCAC TCAAGGTGGC ATTATGATTA 301 CCATCAAAGA GGCCATTAGT GATGAAGATG AAGATGAAGC CCTGTACCAG AAGGTATCCT 361 CTGAGCAGGG CCGGGTGGAG CATCTCGGGG ACTTGCTGTC CCACTGCCAG GAATGCGGTT 421 TGGCAGGAGA CTTCTTCATC TTCTGTTTGA AAGAGTTGAC TCATGTGGCC TCGGAAAATG 481 AAACAGAGTT AAAAACTGAG CCCTTCTCCA GCAAGAGCCT CTTGGAATTA GAGCAACATC 541 AGACTCTTCT TGTGGAAGGC CAAGAGCGGA AGCTGCTTGT CCTGCAGCTG ATGGCTGTTC 601 TGTGCGAGAG AATGTCTGAG CAGATATTCA CAAACGTCAC TCAGGTGGTG GACTTTGTAG 661 CAGCAACATT GCAGAGAGCC TGTGCAAGCC TGGCCCATCA GGCAGAGAGC ACCGTGGAAT 721 CACAGACGCT GAGCATGTCC ATGGGGCTGG TGGCTGTCAT GCTAGGAGGA GCTGTTCAGT 781 TGAAGTCAAG TGATTTTGCT GTTCTGAAGC AGTTGTTGCC TCTGTTGGAG AAGGTATCCA 841 ACACATACCC TGATCCGGTC ATCCAAGAAC TCGCTGTTGA TCTCCGCATC ACCATCTCTA 901 CCCATGGAGC CTTTGCCACT GAGGCCGTCA GCATGGCTGC CCAAAGTACA CTGAACAGAA 961 AAGATCTGGA AGGGAAAATA GAAGAGCAGC AACAAACCAG TCATGAAAGA CCCACTGATG 1021 TAGCTCATAG CCACCTTGAA CAACAGCAGA GCCATGAGAC AGCCCCCCAG ACAGGCCTGC 1081 AGTCAAATGC TCCAATCATT CCTCAAGGAG TCAATGAGCC CAGCACTACT ACAAGTCAGA 1141 AATCTGGAAG CGTAACCACA GAACAGCTCC AAGAGGTTCT TTTGTCAGCT TATGACCCTC 1201 AAATTCCAAC ACGGGCTGCT GCCCTGCGTA CTCTTTCCCA CTGGATAGAG CAGAGAGAAG 1261 CAAAAGCCCT TGAGATGCAA GAGAAGCTTC TCAAGATATT CTTGGAAAAC TTGGAACATG 1321 AAGACACTTT TGTATATCTA TCTGCAATTC AGGGGGTTGC CCTGCTGTCA GACGTCTATC 1381 CTGAGAAAAT CTTGCCGGAC TTGTTGGCTC AATATGACAG CAGCAAAGAC AAGCACACAC 1441 CAGAGACCAG AATGAAAGTC GGGGAAGTCC TTATGCGAAT CGTCAGGGCA TTAGGAGACA 1501 TGGTCTCAAA GTACCGAGAA CCTTTGATCC ATACCTTCCT GAGGGGAGTG AGAGATCCTG 1561 ATGGTGCTCA CAGGGCCAGC AGCTTGGCCA ACCTTGGGGA GCTGTGCCAG AGGCTGGACT 1621 TTCTGCTGGG CTCCGTGGTC CATGAGGTAA CAGCTTGCCT GATTGCTGTG GCCAAAACAG 1681 ATGGTGAAGT TCAAGTACGC AGAGCTGCCA TACATGTGGT TGTGCTGCTG CTTCGGGGAC 1741 TCAGCCAGAA AGCTACTGAG GTGCTGAGCG CCGTCCTCAA GGATCTCTAC CACCTGCTGA 1801 AGCACGTAGT GTGTCTGGAG CCCGATGACG TGGCCAAGCT CCATGCCCAG TTGGCCCTAG 1861 AAGAGCTGGA TGACATCATG AAAAACTTCC TGTTCCCTCC ACAGAAGCTG GAGAAGAAGA 1921 TCATGGTCCT GCAGTACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1981 tatcaatttg ttgcaacgaa c