Construct: ORF ccsbBroadEn_14266
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010712.1_s300c1, BRDN0000456661
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MSANTD2 (79684)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | NM_001308027.2 | 99.8% | 99.8% | 1676_1677delACinsC |
| 2 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | NM_024631.4 | 90.5% | 90.5% | 508_509ins156;1520_1521delACinsC |
| 3 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | NM_001312920.1 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 4 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | NM_001312921.2 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 5 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | NM_001352400.2 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 6 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | NM_001352401.2 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 7 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_006718905.2 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 8 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_006718906.3 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 9 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_017018296.2 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 10 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_017018297.1 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 11 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_017018298.2 | 58.7% | 58.6% | 0_1ins690;986_987delACinsC |
| 12 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_011542982.3 | 44.1% | 42.9% | (many diffs) |
| 13 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_011542981.3 | 43.2% | 42.8% | 1_267del;1095_1177del;1227_1228ins799 |
| 14 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | NM_001312919.2 | 31.3% | 30.9% | (many diffs) |
| 15 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XM_005271674.4 | 28.3% | 26.1% | (many diffs) |
| 16 | human | 79684 | MSANTD2 | Myb/SANT DNA binding domain... | XR_002957196.1 | 24% | (many diffs) | |
| 17 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | NM_146222.2 | 93.5% | 97.1% | (many diffs) |
| 18 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_017313314.1 | 88.8% | 80.7% | (many diffs) |
| 19 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_006510230.3 | 72.7% | 75.8% | (many diffs) |
| 20 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_006510232.3 | 54% | 56.5% | (many diffs) |
| 21 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_006510233.3 | 54% | 56.5% | (many diffs) |
| 22 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_017313315.1 | 26.9% | 25.7% | (many diffs) |
| 23 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_017313316.1 | 26.9% | 25.7% | (many diffs) |
| 24 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_017313317.1 | 26.9% | 25.7% | (many diffs) |
| 25 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XM_017313318.1 | 25.8% | 25.9% | (many diffs) |
| 26 | mouse | 235184 | Msantd2 | Myb/SANT-like DNA-binding d... | XR_001778867.1 | 16.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1743
- ORF length:
- 1677
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGCGCCCTGT GGCTCGGAGC TGCCCGCCAA CTCGCCGCTA AAAATTCCGA 121 AGATGGAGGT GCTTTCCCCG GCTTCTCCTG GTGGCCTGAG CGACGGAAAT CCATCGCTGT 181 CCGACCCTTC CACGCCTCGG GGTGCCTCCC CGCTCGGGCC GGGCAGTGCG GCGGGCTCGG 241 GGGCAGCGGC GTCCGGGGGT CTCGGGCTGG GGCTGGGGGG CCGCAGCGCC GCCTCGTCCT 301 CGGTCTCCTT CTCCCCTGGT GGCGGCGGTG GCGGGGCTGC GGCAGCCGCC GCCGCCGCCT 361 GCCGGGGCAT GTCGTGGACG CCAGCCGAGA CGAACGCGCT CATCGCAGTG TGGGGCAACG 421 AGCGGCTGGT GGAGGCGCGG TACCAGCAGC TGGAGGGAGC CGGCACGGTG TTCGGCAGCA 481 AGGCCCCCGG GCCAGCCATG TACGAGCGCG TGTCCCGGGC CCTGGCCGAG CTGGGCTACG 541 AGCGGACCCC GTCCCAGTGC CGGGAGCGCA TCAAGACCCT TCGCAGGTGT TACAGTCGGG 601 TGAAAGAACA TGGTGTTGGG AAAAGAAAGA GCAGTTACAC ATTTGAACAG TTGGAACAGG 661 TGTTTGGTCA GGGAGGATGG GATGCTCAGC CCTGCCAGCC TGTACTTATT AACAGTAGTG 721 GCTTGTACCA GGAGCTGGAG TCAGATGGCA GCACTATGGA GGACTATTCA CAGGAGGACT 781 GGGGAAACCA CAGTCAGGAT CTCCATGGCT ATCCAACAGA TCAGGAATTG GATGAAATAC 841 CTGTCACAAA GAGAACATTA AAAATAAAAC AAGAGTCTTC TGAAGAAGCA CAGAAGAGAG 901 ACATCATGCA GAATATTGTA CAGATTTTGG AATCGGTACA GTTGAAATGG GAACTTTTTC 961 AGAGCTGGAC AGACTTTTCA AGGCTCCATC TTTCTAATAA ACTGGCCATT TTTGGAATTG 1021 GTTATAACAC CCGTTGGAAA GAGGATATCC GTTACCATTA TGCTGAGATC AGCTCCCAGG 1081 TGCCCCTTGG CAAGCGACTT CGGGAGTACT TCAACTCTGA GAAGCCTGAA GGACGGATCA 1141 TTATGACCCG AGTGCAGAAA ATGAACTGGA AAAATGTTTA CTACAAATTT TTAGAGATCA 1201 CTATTAGCGA AGCTAGGTGC TTGGAGCTGC ACATGGAAAT TGACTGGATA CCCATTGCCC 1261 ACTCCAAACC AACTGGTGGG AATGTTGTTC AATATTTATT GCCTGGGGGT ATTCCTAAAA 1321 GCCCAGGCCT TTATGCCATT GGCTATGAAG AATGTATTGA GAGGCCCCTC TCACCACACA 1381 TGGAGCAAAG TTCCCTGGAC CCAGGAAAAG AGGGCCGGGT TGACCTGGAA ACCCTTTCAG 1441 CACAAGCCTC ATTACAGGTG GAAATAGAAC CCACCCGAAT TATCTATTGC TACCTCGGGA 1501 TTGCTGAGGT CAGGACTCTA CAGCAGTGCT TATTTTTACA TTTCCAAGCG AATACCAAAA 1561 CCTTCAGCAA AGATTGGGTT GGTATTAACG GGTTTTTGTC TCAGAACTGT ATTGTGGATC 1621 CCGGAGTTTC CCCCAAATCC ATCTACATCA AATTTGTAGA AGTAGAGAGG GATTTTCTTT 1681 CCGCAGGCTC TTTAGTTGAG TGCCTGGAAA AAGCCATTGG ATACCCCTTA AAATTTAACA 1741 CTGCCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat caatttgttg 1801 caacgaac