Construct: ORF ccsbBroadEn_14268

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000830.1_s300c1, BRDN0000395560
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PRKRIP1 (79706)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79706 PRKRIP1 PRKR interacting protein 1 NM_024653.4 99.6% 98.9% 316G>T;546delG
2 human 100630923 LOC100630923 LOC100289561-PRKRIP1 readth... NR_038967.1 16.7% (many diffs)
3 mouse 66801 Prkrip1 Prkr interacting protein 1 ... NM_025774.3 88.9% 90.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
618
ORF length:
552
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TAGCCCAGCC GCCTCCTCGG TGCGACCACC GAGGCCCAAG AAAGAGCCGC
121AGACGCTCGT CATCCCCAAG AATGCGGCGG AGGAGCAGAA GCTCAAGCTG GAGCGGCTCA
181TGAAGAACCC GGACAAAGCA GTTCCAATTC CAGAGAAAAT GAGTGAATGG GCACCTCGAC
241CTCCCCCAGA ATTTGTCCGA GATGTCATGG GTTCAAGTGC TGGGGCCGGC AGTGGAGAGT
301TCCACGTGTA CAGACATCTG CGCCGGAGAG AATATCAGCG ACAGGACTAC ATGGATGCCA
361TGGCTGAGAA GCAAAAATTG TATGCAGAGT TTCAGAAAAG ACTGGAAAAG AATAAAATTG
421CTGCAGAGGA GCAGACCGCA AAGCGCCGGA AGAAGCGCCA GAAGTTAAAA GAGAAGAAAT
481TACTGGCAAA GAAGATGAAA CTTGAACAGA AGAAACAAGA AGGACCCGGT CAGCCCAAGG
541AGCAGGGGTC CAGCAGCTCT GCGGAGGCAT CTGGAACAGA GGAGGAGGAG GAAGTGCCCA
601GTTTCACCAT GGGCGATGCC CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg
661cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)