Construct: ORF ccsbBroadEn_14290
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002763.1_s300c1, BRDN0000396559
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC38A1 (81539)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 81539 | SLC38A1 | solute carrier family 38 me... | NM_001077484.2 | 99.7% | 99.5% | 10T>G;1453_1454delGAinsCG |
| 2 | human | 81539 | SLC38A1 | solute carrier family 38 me... | NM_001278387.2 | 99.7% | 99.5% | 10T>G;1453_1454delGAinsCG |
| 3 | human | 81539 | SLC38A1 | solute carrier family 38 me... | NM_001278388.2 | 99.7% | 99.5% | 10T>G;1453_1454delGAinsCG |
| 4 | human | 81539 | SLC38A1 | solute carrier family 38 me... | NM_001278389.2 | 99.7% | 99.5% | 10T>G;1453_1454delGAinsCG |
| 5 | human | 81539 | SLC38A1 | solute carrier family 38 me... | NM_030674.4 | 99.7% | 99.5% | 10T>G;1453_1454delGAinsCG |
| 6 | human | 81539 | SLC38A1 | solute carrier family 38 me... | XM_011538786.2 | 94.4% | 91.9% | (many diffs) |
| 7 | human | 81539 | SLC38A1 | solute carrier family 38 me... | XM_011538787.2 | 93.4% | 93% | (many diffs) |
| 8 | human | 81539 | SLC38A1 | solute carrier family 38 me... | XM_017019990.1 | 93.4% | 93% | (many diffs) |
| 9 | human | 81539 | SLC38A1 | solute carrier family 38 me... | XM_011538784.2 | 93% | 91.6% | (many diffs) |
| 10 | human | 81539 | SLC38A1 | solute carrier family 38 me... | NM_001278390.1 | 92.7% | 92% | (many diffs) |
| 11 | mouse | 105727 | Slc38a1 | solute carrier family 38, m... | NM_001166456.1 | 84.2% | 92.6% | (many diffs) |
| 12 | mouse | 105727 | Slc38a1 | solute carrier family 38, m... | NM_001166458.1 | 84.2% | 92.6% | (many diffs) |
| 13 | mouse | 105727 | Slc38a1 | solute carrier family 38, m... | NM_134086.4 | 84.2% | 92.6% | (many diffs) |
| 14 | mouse | 105727 | Slc38a1 | solute carrier family 38, m... | XM_006520235.3 | 84.2% | 92.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1527
- ORF length:
- 1461
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GCATGTCAAA AGTGGACTCG AATTAACTGA GTTGCAAAAC ATGACAGTGC 121 CCGAGGATGA TAACATTAGC AATGACTCCA ATGATTTCAC CGAAGTAGAA AATGGTCAGA 181 TAAATAGCAA GTTTATTTCT GATCGTGAAA GTAGAAGAAG TCTCACAAAC AGCCATTTGG 241 AAAAAAAGAA GTGTGATGAG TATATTCCAG GTACAACCTC CTTAGGCATG TCTGTTTTTA 301 ACCTAAGCAA CGCCATTATG GGCAGTGGGA TTTTGGGACT CGCCTTTGCC CTGGCAAACA 361 CTGGAATCCT ACTTTTTCTG GTACTTTTGA CTTCAGTGAC ATTGCTGTCT ATATATTCAA 421 TAAACCTCCT ATTGATCTGT TCAAAAGAAA CAGGCTGCAT GGTGTATGAA AAGCTGGGGG 481 AACAAGTCTT TGGCACCACA GGGAAGTTCG TAATCTTTGG AGCCACCTCT CTACAGAACA 541 CTGGAGCAAT GCTGAGCTAC CTCTTCATCG TAAAAAATGA ACTACCCTCT GCCATAAAGT 601 TTCTAATGGG AAAGGAAGAG ACATTTTCAG CCTGGTACGT GGATGGCCGC GTTCTGGTGG 661 TGATAGTTAC CTTTGGCATA ATTCTCCCTC TGTGTCTCTT GAAGAACTTA GGGTATCTTG 721 GCTATACTAG TGGATTTTCC TTGAGCTGTA TGGTTTTTTT CCTAATTGTG GTTATTTACA 781 AGAAATTTCA AATTCCCTGC ATTGTTCCAG AGCTAAATTC AACAATAAGT GCTAATTCAA 841 CAAATGCTGA CACGTGTACG CCAAAATATG TTACCTTCAA TTCAAAGACC GTGTATGCTT 901 TACCCACCAT TGCATTTGCA TTTGTTTGCC ACCCGTCAGT CCTGCCAATT TACAGTGAGC 961 TTAAAGACCG ATCACAGAAA AAAATGCAGA TGGTTTCAAA CATCTCCTTT TTCGCCATGT 1021 TTGTTATGTA CTTCTTGACT GCCATTTTTG GCTACTTGAC ATTCTATGAC AACGTGCAGT 1081 CCGACCTCCT TCACAAATAT CAGAGTAAAG ATGACATTCT CATCCTGACA GTGCGGCTGG 1141 CTGTCATTGT TGCTGTGATC CTCACAGTGC CGGTGTTATT TTTCACGGTT CGTTCATCTT 1201 TATTTGAACT GGCTAAGAAA ACAAAGTTTA ATTTATGTCG TCATACCGTG GTTACCTGCA 1261 TACTCTTGGT TGTTATCAAC TTGTTGGTGA TCTTCATACC CTCCATGAAG GATATTTTTG 1321 GAGTCGTAGG AGTTACATCT GCTAACATGC TTATTTTCAT TCTTCCTTCA TCTCTTTATT 1381 TAAAAATCAC AGACCAGGAT GGAGATAAAG GAACTCAAAG AATTTGGGCT GCCCTTTTCT 1441 TGGGCCTGGG GGTGTTGTTC TCCTTGGTCA GCATTCCCTT GGTCATCTAT GACTGGGCCT 1501 GCTCATCGAG TAGTGACCGA GGCCACTGCC CAACTTTCTT GTACAAAGTt ggcattataa 1561 gaaagcattg cttatcaatt tgttgcaacg aac