Construct: ORF ccsbBroadEn_14300
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005797.1_s300c1, BRDN0000456881
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- KRTAP1-5 (83895)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83895 | KRTAP1-5 | keratin associated protein 1-5 | NM_031957.2 | 99.8% | 18.9% | 101_102insA |
| 2 | human | 81850 | KRTAP1-3 | keratin associated protein 1-3 | NM_030966.2 | 87.9% | 18.5% | (many diffs) |
| 3 | human | 81851 | KRTAP1-1 | keratin associated protein 1-1 | NM_030967.3 | 81.6% | 16.3% | (many diffs) |
| 4 | human | 728255 | KRTAP1-4 | keratin associated protein 1-4 | NM_001257305.1 | 60.1% | 15.2% | (many diffs) |
| 5 | mouse | 75586 | Krtap9-3 | keratin associated protein 9-3 | NM_029351.2 | 61.6% | 17.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 165
- ORF length:
- 99
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CTGCTGCCAG ACCAGCTTCT GTGGATATCC CAGCTTCTCC ATCAGTGGGA 121 CCTGTGGCTC CAGCTGCTGC CAGCCAAGCT GCTGTGAGAC CAGCTGACTG CCAGCCACGC 181 AGCTGCCAGA CTAGCTTCTG CGGATTTCCC AGCTTCTCAA CCAGTGGGAC CTGCAGCTCC 241 AGTTGCTGCC AGCCAAGCTG CTGTGAGACC AGCTGCTGCC AGCCAAGCTG CTGTGAGACC 301 AGCTGCTGCC AGCCAAGCTG CTGCCAGATC AGCTCCTGCG GAACTGGCTG TGGCATTGGT 361 GGTGGCATCA GCTATGGCCA GGAGGGCAGC AGTGGAGCTG TGAGCACCCG TATCAGGTGG 421 TGCCGCCCAG ACAGTCGTGT GGAGGGCACC TACCTACCCC CCTGCTGTGT GGTGAGCTGC 481 ACGCCCCCAT CCTGCTGCCA ACTGCACCAT GCCCAGGCCT CCTGCTGCCG CCCGTCCTAC 541 TGTGGACAGT CCTGCTGCCG CCCAGTCTGC TGCTGTGAGC CCACTTGCTG CCCAACTTTC 601 TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac