Construct: ORF ccsbBroadEn_14321

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017036.1_s300c1, BRDN0000456508
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC49A4 (84925)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84925 SLC49A4 solute carrier family 49 me... NM_032839.3 99.9% 99.1% 1422delG
2 human 84925 SLC49A4 solute carrier family 49 me... XR_001740333.2 14.2% 1_135del;1557delG;1570_10079del
3 mouse 224132 Slc49a4 solute carrier family 49 me... NM_153550.4 87.6% 93.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1500
ORF length:
1434
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CTCTCGCTGG AGCAGCGAAG AGGAGAGGCA GCCGCTGCTG GGGCCCGGGC
121TCGGGCCTGG GCTGGGGGCC TCCTGGAGAA GCCGGGAGGC GGCGGCGGCG GCGCTGCCCG
181CGGCGGTCCC GGGTCCCGGG CGGGTATACG GGCGCCGCTG GCTGGTGCTG CTGCTCTTCT
241CGCTGCTGGC GTTCGTTCAG GGCCTGGTCT GGAACACCTG GGGTCCCATC CAGAACTCGG
301CGCGCCAGGC CTACGGCTTC TCCAGCTGGG ACATCGCGCT GCTCGTGCTG TGGGGGCCCA
361TCGGCTTCCT GCCCTGCTTC GCGTTCATGT GGCTCCTGGA CAAGAGAGGT CTCCGGATAA
421CTGTGCTCCT GACATCCTTC CTTATGGTTT TGGGAACTGG TCTAAGATGC ATACCTATAT
481CAGACTTAAT CCTTAAAAGA AGATTAATTC ATGGAGGACA GATGTTAAAT GGATTGGCAG
541GTCCAACTGT AATGAATGCA GCACCATTTC TCTCTACGAC GTGGTTTTCT GCAGATGAAA
601GGGCCACAGC CACAGCTATT GCATCAATGC TCAGTTATCT TGGGGGAGCA TGTGCATTTT
661TAGTTGGACC ACTTGTTGTT CCAGCTCCCA ATGGGACATC ACCTCTTCTT GCTGCAGAGA
721GCAGCAGGGC GCATATTAAA GATCGCATAG AGGCTGTGTT ATATGCAGAA TTTGGAGTTG
781TCTGCTTAAT ATTTTCTGCA ACACTAGCTT ATTTCCCACC CCGACCTCCT CTTCCTCCCA
841GTGTTGCTGC AGCTAGCCAG CGGCTGAGTT ATCGGAGAAG CGTTTGTAGA TTATTAAGCA
901ATTTTCGATT TTTGATGATT GCTTTAGCAT ATGCCATACC ACTTGGTGTA TTTGCTGGCT
961GGTCTGGAGT TCTGGACTTA ATTTTAACAC CAGCGCATGT CAGCCAAGTA GATGCTGGCT
1021GGATTGGATT TTGGTCCATA GTTGGAGGCT GTGTTGTTGG AATAGCTATG GCAAGGTTTG
1081CAGATTTTAT CAGGGGTATG CTGAAACTAA TTCTTCTCCT CCTGTTTTCG GGAGCTACAC
1141TGTCATCCAC GTGGTTCACC CTGACCTGTT TGAACAGCAT CACACACCTA CCTTTAACCA
1201CAGTGACATT GTATGCCTCC TGTATTCTCC TGGGAGTGTT CTTGAATAGC AGCGTGCCTA
1261TATTTTTTGA GCTTTTTGTG GAAACTGTCT ACCCAGTTCC AGAAGGAATT ACTTGTGGAG
1321TTGTCACTTT TTTAAGTAAT ATGTTTATGG GAGTACTTTT ATTTTTTCTC ACATTTTATC
1381ATACAGAGTT GTCTTGGTTC AACTGGTGCC TTCCCGGGTC GTGTTTGCTC AGTCTCCTCC
1441TCATTCTGTG CTTCAGGGAA TCCTATGACA GACTCTATCT TGATGTGTTG TCTCCGTTTA
1501CCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa
1561cgaac

Download FASTA (ORF) (Full)