Construct: ORF ccsbBroadEn_14428

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018195.1_s300c1, BRDN0000387385
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TET3 (200424)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 200424 TET3 tet methylcytosine dioxygen... XM_011532690.1 98.1% 46% (many diffs)
2 human 200424 TET3 tet methylcytosine dioxygen... XM_024452747.1 98.1% 46% (many diffs)
3 human 200424 TET3 tet methylcytosine dioxygen... NM_001366022.1 54.9% 25.7% (many diffs)
4 human 200424 TET3 tet methylcytosine dioxygen... XM_011532687.2 54.4% 25.5% (many diffs)
5 human 200424 TET3 tet methylcytosine dioxygen... XM_011532686.2 52.6% 24.7% (many diffs)
6 human 200424 TET3 tet methylcytosine dioxygen... XM_011532685.2 52.2% 24.4% (many diffs)
7 human 200424 TET3 tet methylcytosine dioxygen... NM_001287491.2 52.1% 24.4% (many diffs)
8 human 200424 TET3 tet methylcytosine dioxygen... XM_011532682.2 51.6% 24.2% (many diffs)
9 human 200424 TET3 tet methylcytosine dioxygen... XM_011532683.2 51.6% 24.2% (many diffs)
10 human 200424 TET3 tet methylcytosine dioxygen... XM_011532684.2 51.6% 24.2% (many diffs)
11 human 200424 TET3 tet methylcytosine dioxygen... XM_017003566.1 51.6% 24.2% (many diffs)
12 human 200424 TET3 tet methylcytosine dioxygen... XM_024452746.1 12.8% 17.7% 1_2574del;2593G>A;3267_3268ins2118
13 human 200424 TET3 tet methylcytosine dioxygen... XM_024452745.1 12.7% 17.5% (many diffs)
14 mouse 194388 Tet3 tet methylcytosine dioxygen... NM_183138.2 49% 25.1% (many diffs)
15 mouse 194388 Tet3 tet methylcytosine dioxygen... XM_006505777.3 45.8% 23.4% (many diffs)
16 mouse 194388 Tet3 tet methylcytosine dioxygen... NM_001347313.1 45.3% 23.2% (many diffs)
17 mouse 194388 Tet3 tet methylcytosine dioxygen... XM_006505775.3 45.3% 23.2% (many diffs)
18 mouse 194388 Tet3 tet methylcytosine dioxygen... XM_006505776.3 45.3% 23.2% (many diffs)
19 mouse 194388 Tet3 tet methylcytosine dioxygen... XM_017321465.1 45.3% 23.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1386
ORF length:
1320
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGAGCGGTAT GGAAAGAAGG GGAAAGCCAT CCGGATCGAG AAGGTCATCT
121ACACGGGGAA GGAGGGAAAG AGCTCCCGCG GTTGCCCCAT TGCAAAGTGG GTGATCCGCA
181GGCACACGCT GGAGGAGAAG CTACTCTGCC TGGTGCGGCA CCGGGCAGGC CACCACTGCC
241AGAACGCTGT GATCGTCATC CTCATCCTGG CCTGGGAGGG CATTCCCCGT AGCCTCGGAG
301ACACCCTCTA CCAGGAGCTC ACCGACACCC TCCGGAAGTA TGGGAACCCC ACCAGCCGGA
361GATGCGGCCT CAACGATGAC CGGACCTGCG CTTGCCAAGG CAAAGACCCC AACACCTGTG
421GTGCCTCCTT CTCCTTTGGT TGTTCCTGGA GCATGTACTT CAACGGCTGC AAGTATGCTC
481GGAGCAAGAC ACCTCGCAAG TTCCGCCTCG CAGGGGACAA TCCCAAAGAG GAAGAAGTGC
541TCCGGAAGAG TTTCCAGGAC CTGGCCACCG AAGTCGCTCC CCTGTACAAG CGACTGGCCC
601CTCAGGCCTA TCAGAACCAG GTGACCAACG AGGAAATAGC GATTGACTGC CGTCTGGGGC
661TGAAGGAAGG ACGGCCCTTC GCGGGGGTCA CGGCCTGCAT GGACTTCTGT GCCCACGCCC
721ACAAGGACCA GCATAACCTC TACAATGGGT GCACCGTGGT CTGCACCCTG ACCAAGGAAG
781ACAATCGCTG CGTGGGCAAG ATTCCCGAGG ATGAGCAGCT GCATGTTCTC CCCCTGTACA
841AGATGGCCAA CACGGATGAG TTTGGTAGCG AGGAGAACCA GAATGCAAAG GTGGGCAGCG
901GAGCCATCCA GGTGCTCACC GCCTTCCCCC GCGAGGTCCG ACGCCTGCCC GAGCCTGCCA
961AGTCCTGCCG CCAGCGGCAG CTGGAAGCCA GAAAGGCAGC AGCCGAGAAG AAGAAGATTC
1021AGAAGGAGAA GCTGAGCACT CCGGAGAAGA TCAAGCAGGA GGCCCTGGAG CTGGCGGGCA
1081TTACGTCGGA CCCAGGCCTG TCTCTGAAGG GTGGATTGTC CCAGCAAGGC CTGAAGCCCT
1141CCCTCAAGGT GGAGCCGCAG AACCACTTCA GCTCCTTCAA GTACAGCGGC AACGCGGTGG
1201TGGAGAGCTA CTCGGTGCTG GGCAACTGCC GGCCCTCCGA CCCTTACAGC ATGAACAGCG
1261TGTACTCCTA CCACTCCTAC TATGCACAGC CCAGCCTGAC CTCCGTCAAT GGCTTCCACT
1321CCAAGTACGC TCTCCCGTCT TTTAGCTACT ATGGCTTTCC ATCCAGCAAC CCCGTCTTCC
1381CCTCTTAGTT CCTGGGTCCT GGTGCCTGGG GGCATAGTGG CAGCAGTGGC AGTTTTGAGA
1441AGAAGCCAGA CCTCCACGCT CTGCACAACA GCCTGAGCCC GGCCTACGGT GGTGCTGAGT
1501TTGCCGAGCT GCCCAGCCAG GCTGTTCCCA CAGACGCCCA CCACCCCACT CCTCACCACC
1561AGCAGCCTGC GTACCCAGGC CCCAAGGAGT ATCTGCTTCC CAAGGCCCCC CTACTCCACT
1621CAGTGTCCAG GGACCCCCCC CCCTTTGCCC AGAGCTCCAA CTGCTACAAC AGATCCATCA
1681AGCAAGAGCC AGTAGACCCG CTGACCCAGG CTGAGCCTGT GCCCAGAGAC GCTGGCAAGA
1741TGGGCAAGAC ACCTCTGTCC GAGGTGTCTC AGAATGGAGG ACCCAGTCAC CTTTGGGGAC
1801AGTACTCAGG AGGCCCAAGC ATGTCCCCCA AGAGGACTAA CGGTGTGGGT GGCAGCTGGG
1861GTGTGTTCTC GTCTGGGGAG AGTCCTGCCA TCGTCCCTGA CAAGCTCAGT TCCTTTGGGG
1921CCAGCTGCCT GGCCCCTTCC CACTTCACAG ATGGCCAGTG GGGGCTGTTC CCCGGTGAGG
1981GGCAGCAGGC AGCTTCCCAC TCTGGAGGAC GGCTGCGAGG CAAACCGTGG AGCCCCTGCA
2041AGTTTGGGAA CAGCACCTCG GCCTTGGCTG GGCCCAGCCT GACTGAGAAG CCGTGGGCGC
2101TGGGGGCAGG GGATTTCAAC TCGGCCCTGA AAGGTAGTCC TGGGTTCCAA GACAAGCTGT
2161GGAACCCCAT GAAAGGAGAG GAGGGCAGGA TTCCAGCCGC AGGGGCCAGC CAGCTGGACA
2221GGGCCTGGCA GTCCTTTGGT CTGCCCCTGG GATCCAGCGA GAAGCTGTTT GGGGCTCTGA
2281AGTCAGAGGA GAAGCTGTGG GACCCCTTCA GCCTGGAGGA GGGGCCGGCT GAGGAGCCCC
2341CCAGCAAGGG AGCGGTGAAG GAGGAGAAGG GCGGTGGTGG TGCGGAGGAG GAAGAGGAGG
2401AGCTGTGGTC GGACAGTGAA CACAACTTCC TGGACGAGAA CATCGGCGGC GTGGCCGTGG
2461CCCCAGCCCA CGGCTCCATC CTCATCGAGT GTGCCCGGCG GGAGCTGCAC GCCACCACGC
2521CGCTTAAGAA GCCCAACCGC TGCCACCCCA CCCGCATCTC GCTGGTCTTC TACCAGCACA
2581AGAACCTCAA CCAGCCCAAC CACGGGCTGG CCCTCTGGGA AGCCAAGATG AAGCAGCTGG
2641CGGAGAGGGC ACGGGCACGG CAGGAGGAGG CTGCCCGGCT GGGCCTGGGC CAGCAGGAGG
2701CCAAGCTCTA CGGGAAGAAG CGCAAGTGGG GGGGCACTGT GGTTGCTGAG CCCCAGCAGA
2761AAGAGAAGAA GGGGGTCGTC CCCACCCGGC AGGCACTGGC TGTGCCCACA GACTCGGCGG
2821TCACCGTGTC CTCCTATGCC TACACGAAGG TCACTGGCCC CTACAGCCGC TGGATCTACC
2881CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
2941aac

Download FASTA (ORF) (Full)

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