Transcript: Mouse XM_006505775.3

PREDICTED: Mus musculus tet methylcytosine dioxygenase 3 (Tet3), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tet3 (194388)
Length:
11780
CDS:
700..6111

Additional Resources:

NCBI RefSeq record:
XM_006505775.3
NBCI Gene record:
Tet3 (194388)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505775.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000375394 GCTCCAACGAGAAGCTATTTG pLKO_005 5483 CDS 100% 13.200 18.480 N Tet3 n/a
2 TRCN0000375393 CTGATACCCTCCGGAAGTATG pLKO_005 3554 CDS 100% 10.800 15.120 N Tet3 n/a
3 TRCN0000246260 GAACCTTCTCTTGCGCTATTT pLKO_005 2701 CDS 100% 13.200 10.560 N TET3 n/a
4 TRCN0000376843 GAACCTTCTCTTGCGCTATTT pLKO_005 2701 CDS 100% 13.200 10.560 N Tet3 n/a
5 TRCN0000366564 TACCTAGACACACCTACTAAG pLKO_005 3136 CDS 100% 0.000 0.000 N Tet3 n/a
6 TRCN0000376789 GAAAGATGAAGGCCCATATTA pLKO_005 3231 CDS 100% 15.000 10.500 N Tet3 n/a
7 TRCN0000366499 CGCCCACAAGGACCAACATAA pLKO_005 3948 CDS 100% 13.200 9.240 N Tet3 n/a
8 TRCN0000375340 CTTCTTGGAGTCACCTCTAAA pLKO_005 3114 CDS 100% 13.200 9.240 N Tet3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505775.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14428 pDONR223 100% 45.3% 23.2% None (many diffs) n/a
2 ccsbBroad304_14428 pLX_304 0% 45.3% 23.2% V5 (not translated due to prior stop codon) (many diffs) n/a
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