Construct: ORF ccsbBroadEn_14441
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008515.1_s300c1, BRDN0000456966
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZSCAN25 (221785)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350979.2 | 85.4% | 85.4% | 1_21del;588_803del |
| 2 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350980.2 | 85.4% | 85.4% | 1_21del;588_803del |
| 3 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_145115.3 | 85.4% | 85.4% | 1_21del;588_803del |
| 4 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | XM_011515905.2 | 85.4% | 85.4% | 1_21del;588_803del |
| 5 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | XM_011515907.2 | 85.4% | 85.4% | 1_21del;588_803del |
| 6 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | XM_017011824.1 | 85.4% | 85.4% | 1_21del;588_803del |
| 7 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350981.2 | 72.8% | 57.3% | (many diffs) |
| 8 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350982.2 | 72.8% | 57.3% | (many diffs) |
| 9 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350983.2 | 72.8% | 57.3% | (many diffs) |
| 10 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | XM_011515910.2 | 53.6% | 42.5% | (many diffs) |
| 11 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350984.2 | 49.2% | 43.6% | (many diffs) |
| 12 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350985.2 | 49.2% | 43.6% | (many diffs) |
| 13 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | XM_011515909.2 | 49.2% | 43.6% | (many diffs) |
| 14 | human | 221785 | ZSCAN25 | zinc finger and SCAN domain... | NM_001350986.2 | 40.6% | 41% | 1_21del;588_679del;726_727ins782 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1464
- ORF length:
- 1395
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGAAGCT CCTCAGCAGC AGTTGGGTAT TCCTGTGGTG AAACTGGAGA 121 AAGAGTTGCC ATGGGGCAGA GGAAGGGAGG ACCCTAGTCC AGAGACTTTT CGGCTGAGGT 181 TTCGGCAGTT CCGCTACCAG GAGGCAGCTG GACCCCAGGA AGCTCTTAGG GAGCTCCAGG 241 AGCTCTGTCG TCGGTGGCTG AGGCCCGAGT TGCACACCAA GGAGCAGATC CTGGAGCTGC 301 TGGTGCTGGA GCAGTTCCTC ACTATCCTGC CCCGCGAGTT CTACGCCTGG ATCCGGGAGC 361 ATGGCCCAGA GAGTGGCAAG GCCCTGGCCG CCATGGTGGA GGACCTGACA GAAAGAGCAC 421 TGGAGGCCAA GGCGGTTCCA TGCCACAGGC AGGGAGAGCA GGAGGAAACA GCACTTTGCA 481 GAGGCGCTTG GGAGCCAGGC ATCCAGCTGG GGCCAGTGGA GGTCAAGCCT GAATGGGGGA 541 TGCCCCCTGG GGAAGGAGTT CAAGGTCCAG ACCCAGGTAC CGAGGAGCAG CTCAGTCAGG 601 ACCCTGGAGA TGAGACACGG GCCTTCCAGG AGCAAGGCGG TGGGAGCAAG GAAAAGGAGG 661 CAAAACCCCC ACAGGAAGAC CTGAAAGGGG CGCTGGTGGC ACTGACATCA GAGAGGTTTG 721 GGGAAGCCTC TCTCCAGGGC CCTGGGCTCG GAAGGGTCTG TGAGCAGGAG CCTGGTGGCC 781 CTGCAGGCAG TGCGCCTGGG CTTCCTCCTC CCCAGCACGG TGCCATCCCC CTGCCTGACG 841 AAGTCAAAAC CCACAGCTCC TTCTGGAAGC CTTTCCAGTG CCCTGAGTGT GGGAAAGGAT 901 TCAGTCGGAG CTCCAATCTC GTCAGGCACC AGCGAACCCA CGAAGAGAAG TCTTATGGCT 961 GTGTGGAGTG TGGGAAGGGC TTTACCCTGA GAGAATACCT GATGAAGCAC CAGAGAACCC 1021 ACCTGGGAAA GAGGCCCTAC GTGTGCAGCG AGTGCTGGAA AACCTTCAGC CAGAGACACC 1081 ACCTGGAGGT GCACCAGCGC AGCCACACTG GGGAGAAGCC CTACAAGTGC GGGGACTGCT 1141 GGAAGAGCTT CAGCCGCAGG CAGCACCTGC AGGTGCACCG GAGGACGCAC ACCGGGGAGA 1201 AGCCCTACAC CTGCGAGTGT GGCAAGAGCT TCAGCAGGAA TGCCAATCTG GCGGTGCACC 1261 GGCGTGCCCA CACTGGCGAG AAGCCATATG GGTGCCAGGT GTGCGGGAAG CGGTTCAGCA 1321 AAGGGGAGCG GCTGGTCCGA CACCAGAGAA TCCATACAGG GGAGAAGCCC TACCACTGTC 1381 CTGCCTGCGG GCGAAGCTTC AACCAGAGGT CCATCCTCAA CCGGCACCAG AAGACCCAGC 1441 ACCGCCAGGA GCCGCTGGTG CAGGTGCCAA CTTTTTTGTA CAAAGTTGGc attataagaa 1501 agcattgctt atcaatttgt tgcaacgaac