Construct: ORF ccsbBroadEn_14530
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018837.1_s300c1, BRDN0000458133
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ACVR2B (93)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 93 | ACVR2B | activin A receptor type 2B | NM_001106.4 | 99.3% | 43.2% | (many diffs) |
| 2 | human | 93 | ACVR2B | activin A receptor type 2B | XM_017007515.2 | 96.7% | 39.6% | (many diffs) |
| 3 | human | 93 | ACVR2B | activin A receptor type 2B | XM_017007514.1 | 95.7% | 40.1% | (many diffs) |
| 4 | human | 93 | ACVR2B | activin A receptor type 2B | XM_017007516.1 | 95.4% | 40.1% | (many diffs) |
| 5 | human | 93 | ACVR2B | activin A receptor type 2B | XM_005265583.3 | 94.5% | 39.4% | (many diffs) |
| 6 | mouse | 11481 | Acvr2b | activin receptor IIB | NM_001313757.1 | 91.6% | 42.8% | (many diffs) |
| 7 | mouse | 11481 | Acvr2b | activin receptor IIB | XM_006511926.3 | 90% | 41.2% | (many diffs) |
| 8 | mouse | 11481 | Acvr2b | activin receptor IIB | NM_007397.3 | 87.5% | 40.9% | (many diffs) |
| 9 | mouse | 11481 | Acvr2b | activin receptor IIB | XR_379846.3 | 13.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 811
- ORF length:
- 714
- Sequence:
-
1 AGGATTTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGA CGGCGCCCTG GGTGGCCCTC 121 GCCCTCCTCT GGGGATCGCT GTGCGCCGGC TCTGGGCGTG GGGAGGCTGA GACACGGGAG 181 TGCATCTACT ACAACGCCAA CTGGGAGCTG GAGCGCACCA ACCAGAGCGG CCTGGAGCGC 241 TGCGAAGGCG AGCAGGACAA GCGGCTGCAC TGCTACGCCT CCTGGCGCAA CAGCTCTGGC 301 ACCATCGAGC TCGTGAAGAA GGGCTGCTGG CTAGATGACT TCAACTGCTA CGATAGGCAG 361 GAGTGTGTGG CCACTGAGGA GAACCCCCAG GTGTACTTCT GCTGCTGTGA AGGCAACTTC 421 TGCAACGAGC GCTTCACTCA TTTGCCAGAG GCTGGGGGCC CGGAAGTCAC GTACGAGCCA 481 CCCCCGACAG CCCCCACCCT GCTCACGGTG CTGGCCTACT CACTGCTGCC CATCGGGGGC 541 CTTTCCCTCA TCGTCCTGCT GGCCTTTTGG ATGTACCGGC ATCGCAAGCC CCCCTACGGT 601 CATGTGGACA TCCATGAGGA CCCTGGGCCT CCACCACCAT CCCCTCTGGT GGGCCTGAAG 661 CCACTGCAGC TGCTGGAGAT CAAGGCTCGG GGGCGCTTTG GCTGTGTCTG GAAGGCCCAG 721 CTCATGAATG ACTTTGTAGC TGTCAAGATC TTCCCACTCC AGACAAGCAG TCGTGGCAGA 781 GTGAACGGGA GATCTTCAGC ACACCTGGCA TGAAGCACGA GAACCTGCTA CAGTTCATTG 841 CTGCCGAGAA GCCGAGGCTC CAACCTCGAA AGTAGAGCTG TGGCTCATCA CGGCCTTCCA 901 TGACANGGNN NCCCTCACGG ATTACNTCAA GGGGAACATC ATCACATGGA ACGAACTGTG 961 TCATGTAGCA GAGACGATGT CACGAGGCCT CTCATACCTG CATGAGGATG TGCCCTGGTG 1021 CCGTGGCGAG GGCCACAAGC CGTCTATTGC CCACAGGGAC TTTAAAAGTA AGAATGTATT 1081 GCTGAAGAGC GACCTCACAG CCGTGCTGGC TGACTTTGGC TTGGCTGTTC GATTTGAGCC 1141 AGGGAAACCT CCAGGGGACA CCCACGGACA GGTAGGCACG AGACGGTACA TGGCTCCTGA 1201 GGTGCTCGAG GGAGCCATCA ACTTCCAGAG AGATGCCTTC CTGCGCATTG ACATGTATGC 1261 CATGGGGTTG GTGCTGTGGG AGCTTGTGTC TCGCTGCAAG GCTGCAGACG GACCCGTGGA 1321 TGAGTACATG CTGCCCTTTG AGGAAGAGAT TGGCCAGCAC CCTTCGTTGG AGGAGCTGCA 1381 GGAGGTGGTG GTGCACAAGA AGATGAGGCC CACCATTAAA GATCACTGGT TGAAACACCC 1441 GGGCCTGGCC CAGCTTTGTG TGACCATCGA GGAGTGCTGG GACCATGATG CAGAGGCTCG 1501 CTTGTCCGCG GGCTGTGTGG AGGAGCGGGT GTCCCTGATT CGGAGGTCGG TCAATGGCAC 1561 TACCTCGGAC TGTCTCGTTT CCCTGGTGAC CTCTGTCACC AATGTGGACC TGCCCCCTAA 1621 AGAGTCAAGC ATCTTGCCAA CTTTCTTGTA CAAAGTTGGC ATTATAAGAA AGCATTGCTT 1681 ATCAATTTGT TGCAACGAAC AGGTCACTAT CAGTCAAAAT AAAATCATTA TTGCCATCCA 1741 GCTCCGGGGG T