Construct: ORF ccsbBroadEn_14531
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002807.2_s300c1, BRDN0000458605
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACVRL1 (94)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 94 | ACVRL1 | activin A receptor like type 1 | NM_000020.3 | 100% | 100% | |
| 2 | human | 94 | ACVRL1 | activin A receptor like type 1 | NM_001077401.2 | 100% | 100% | |
| 3 | human | 94 | ACVRL1 | activin A receptor like type 1 | XM_005269235.2 | 100% | 100% | |
| 4 | human | 94 | ACVRL1 | activin A receptor like type 1 | XM_011539008.1 | 77.1% | 77.1% | 1_42del;353_354ins312 |
| 5 | human | 94 | ACVRL1 | activin A receptor like type 1 | XM_024449279.1 | 47.7% | 47.7% | 0_1ins789 |
| 6 | mouse | 11482 | Acvrl1 | activin A receptor, type II... | NM_001277257.1 | 85% | 88.4% | (many diffs) |
| 7 | mouse | 11482 | Acvrl1 | activin A receptor, type II... | NM_001277258.1 | 85% | 88.4% | (many diffs) |
| 8 | mouse | 11482 | Acvrl1 | activin A receptor, type II... | NM_001277259.1 | 85% | 88.4% | (many diffs) |
| 9 | mouse | 11482 | Acvrl1 | activin A receptor, type II... | NM_009612.3 | 85% | 88.4% | (many diffs) |
| 10 | mouse | 11482 | Acvrl1 | activin A receptor, type II... | NM_001277255.1 | 82.5% | 85.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1575
- ORF length:
- 1509
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgac cttgggctcc cccaggaaag gccttctgat gctgctgatg gccttggtga 121 cccagggaga ccctgtgaag ccgtctcggg gcccgctggt gacctgcacg tgtgagagcc 181 cacattgcaa ggggcctacc tgccgggggg cctggtgcac agtagtgctg gtgcgggagg 241 aggggaggca cccccaggaa catcggggct gcgggaactt gcacagggag ctctgcaggg 301 ggcgccccac cgagttcgtc aaccactact gctgcgacag ccacctctgc aaccacaacg 361 tgtccctggt gctggaggcc acccaacctc cttcggagca gccgggaaca gatggccagc 421 tggccctgat cctgggcccc gtgctggcct tgctggccct ggtggccctg ggtgtcctgg 481 gcctgtggca tgtccgacgg aggcaggaga agcagcgtgg cctgcacagc gagctgggag 541 agtccagtct catcctgaaa gcatctgagc agggcgacag catgttgggg gacctcctgg 601 acagtgactg caccacaggg agtggctcag ggctcccctt cctggtgcag aggacagtgg 661 cacggcaggt tgccttggtg gagtgtgtgg gaaaaggccg ctatggcgaa gtgtggcggg 721 gcttgtggca cggtgagagt gtggccgtca agatcttctc ctcgagggat gaacagtcct 781 ggttccggga gactgagatc tataacacag tgttgctcag acacgacaac atcctaggct 841 tcatcgcctc agacatgacc tcccgcaact cgagcacgca gctgtggctc atcacgcact 901 accacgagca cggctccctc tacgactttc tgcagagaca gacgctggag ccccatctgg 961 ctctgaggct agctgtgtcc gcggcatgcg gcctggcgca cctgcacgtg gagatcttcg 1021 gtacacaggg caaaccagcc attgcccacc gcgacttcaa gagccgcaat gtgctggtca 1081 agagcaacct gcagtgttgc atcgccgacc tgggcctggc tgtgatgcac tcacagggca 1141 gcgattacct ggacatcggc aacaacccga gagtgggcac caagcggtac atggcacccg 1201 aggtgctgga cgagcagatc cgcacggact gctttgagtc ctacaagtgg actgacatct 1261 gggcctttgg cctggtgctg tgggagattg cccgccggac catcgtgaat ggcatcgtgg 1321 aggactatag accacccttc tatgatgtgg tgcccaatga ccccagcttt gaggacatga 1381 agaaggtggt gtgtgtggat cagcagaccc ccaccatccc taaccggctg gctgcagacc 1441 cggtcctctc aggcctagct cagatgatgc gggagtgctg gtacccaaac ccctctgccc 1501 gactcaccgc gctgcggatc aagaagacac tacaaaaaat tagcaacagt ccagagaagc 1561 ctaaagtgat tcaataccca actttcttgt acaaagttgg cattataaga aagcattgct 1621 tatcaatttg ttgcaacgaa c