Construct: ORF ccsbBroadEn_14610
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018871.1_s300c1, BRDN0000458167
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- DAPK3 (1613)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1613 | DAPK3 | death associated protein ki... | NM_001348.3 | 98.6% | 41.4% | (many diffs) |
| 2 | human | 1613 | DAPK3 | death associated protein ki... | XM_005259508.2 | 98.6% | 41.4% | (many diffs) |
| 3 | mouse | 13144 | Dapk3 | death-associated protein ki... | NM_001190473.1 | 80% | 39.5% | (many diffs) |
| 4 | mouse | 13144 | Dapk3 | death-associated protein ki... | NM_007828.2 | 80% | 39.5% | (many diffs) |
| 5 | mouse | 13144 | Dapk3 | death-associated protein ki... | XM_006513195.2 | 80% | 39.5% | (many diffs) |
| 6 | mouse | 13144 | Dapk3 | death-associated protein ki... | NM_001190474.1 | 77.2% | 38% | (many diffs) |
| 7 | mouse | 13144 | Dapk3 | death-associated protein ki... | XM_006513194.2 | 75.6% | 38.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 670
- ORF length:
- 573
- Sequence:
-
1 CCTGATTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGT CCACGTTCAG GCAGGAGGAC 121 GTGGAGGACC ATTATGAGAT GGGGGAGGAG CTGGGCAGCG GCCAGTTTGC GATCGTGCGG 181 AAGTGCCGGC AGAAGGGCAC GGGCAAGGAG TACGCAGCCA AGTTCATCAA GAAGCGCCGC 241 CTGTCATCCA GCCGGCGTGG GGTGAGCCGG GAGGAGATCG AGCGGGAGGT GAACATCCTG 301 CGGGAGATCC GGCACCCCAA CATCATCACC CTGCACGACA TCTTCGAGAA CAAGACGGAC 361 GTGGTCCTCA TCCTGGAGCT GGTCTCTGGC GGGGAGCTCT TTGACTTCCT GGCGGAGAAG 421 GAGTCGCTGA CGGAGGACGA GGCCACCCAG TTCCTCAAGC AGATCCTGGA CGGCGTTCAC 481 TACCTGCACT CTAAGCGCAT CGCACACTTT GACCTGAAGC CGGAAAACAT CATGCTGCTG 541 GACAAGAACG TGCCCAACCC ACGAATCAAG CTCATCGACT TCGGCATCGC GCACAAGATC 601 GAGGCGGGGA ACGAGTTCAA GAACATCTTC GGCACCCCGG AGTTTGTGGC CCCAGAGANT 661 GTGAAACTAT GAGCCGNTGG GCCTGGAGGG NGGACATGTG GAGCATCGGT GTCATCACCT 721 ATNTTCCCTC CTGAGCNGTG CATCCCCGTT CCTGGGCGAG ACCAAGCAGG AGACGCTCAC 781 CAACATCTTC AGCCGTGAAC TACGACTTCG ACGAGGAGTA CTTCAGCAAC ACCAGCGAGC 841 TGNCCAANGA CTTCATTCGC NNGCTGCTCG TCAAAGATCC CAAGCGGAGA ATGACCATTG 901 CNCAGAGCCT GGAACATTCC TGGANTAAGG CGATCCGNCG GCGGAACGTG CGTGGTGAGG 961 ACAGCGGCCG CAAGCCCGAG CGGCGGCGCC TGAAGACCAC GCGTCTGAAG GAGTACACCA 1021 TCAAGTCGCA CTCCAGCTTG CCGCCCAACA ACAGCTACGC CGACTTCGAG CGCTTCTCCA 1081 AGGTGCTGGA GGAGGCGGCG GCCGCCGAGG AGGGCCTGCG CGAGCTGCAG CGCAGCCGGC 1141 GGCTCTGCCA CGAGGACGTG GAGGCACTGG CCGCCATCTA CGAGGAGAAG GAGGCCTGGT 1201 ACCGCGAGGA GAGCGACAGC CTGGGCCAGG ACCTGCGGAG GCTACGGCAG GAGCTGCTCA 1261 AGACCGAGGC GCTCAAGCGG CAGGCGCAGG AGGAGGCCAA GGGCGCGCTG CTGGGGACCA 1321 GCGGCCTCAA GCGCCGCTTC AGCCGCCTGG AGAACCGCTA CGAGGCGCTG GCCAAGCAAG 1381 TAGCCTCCGA GATGCGCTTC GTGCAGGACC TCGTGCGCGC CCTGGAGCAG GAGAAGCTGC 1441 AGGGCGTGGA GTGCGGGCTG CGCTTGCCAA CTTTCTTGTA CAAAGTTGGC ATTATAAGAA 1501 AGCATTGCTT ATCAATTTGT TGCAACGAAC AGGTCACTAT CAGTCAAAAT AAAATCATTA 1561 TTGCCATCCC AGCCTGATT