Construct: ORF ccsbBroadEn_14703
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019056.1_s300c1, BRDN0000458674
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MST1R (4486)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4486 | MST1R | macrophage stimulating 1 re... | NM_002447.4 | 100% | 100% | |
| 2 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_005265170.4 | 99.9% | 99.9% | 2439_2441delGCA |
| 3 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533739.2 | 97% | 97% | 2439_2441delGCA;2650_2651ins120 |
| 4 | human | 4486 | MST1R | macrophage stimulating 1 re... | NM_001244937.3 | 96.5% | 96.5% | 2647_2648ins147 |
| 5 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533740.2 | 96.4% | 96.4% | 2439_2441delGCA;2650_2651ins147 |
| 6 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533741.2 | 95% | 95% | 2439_2441delGCA;3066_3067ins207 |
| 7 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533742.2 | 94.4% | 89.4% | 2439_2441delGCA;3813_3814ins137;3972_3973ins94 |
| 8 | human | 4486 | MST1R | macrophage stimulating 1 re... | XR_001740155.1 | 93.3% | (many diffs) | |
| 9 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533743.2 | 92.7% | 92.7% | 2439_2441delGCA;3646_3647ins303 |
| 10 | human | 4486 | MST1R | macrophage stimulating 1 re... | NM_001318913.1 | 92.4% | 92.4% | 1229_1230ins318 |
| 11 | human | 4486 | MST1R | macrophage stimulating 1 re... | XM_011533744.2 | 92.3% | 92.3% | 1229_1230ins318;2121_2123delGCA |
| 12 | human | 4486 | MST1R | macrophage stimulating 1 re... | XR_940428.2 | 86.8% | (many diffs) | |
| 13 | human | 4486 | MST1R | macrophage stimulating 1 re... | NR_134919.2 | 86.6% | 1_264del;3469_3470ins64;4401_4708del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4269
- ORF length:
- 4200
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggagctcctc ccgccgctgc ctcagtcctt cctgttgctg ctgctgttgc 121 ctgccaagcc cgcggcgggc gaggactggc agtgcccgcg caccccctac gcggcctctc 181 gcgactttga cgtgaagtac gtggtgccca gcttctccgc cggaggcctg gtacaggcca 241 tggtgaccta cgagggcgac agaaatgaga gtgctgtgtt tgtagccata cgcaatcgcc 301 tgcatgtgct tgggcctgac ctgaagtctg tccagagcct ggccacgggc cctgctggag 361 accctggctg ccagacgtgt gcagcctgtg gcccaggacc ccacggccct cccggtgaca 421 cagacacaaa ggtgctggtg ctggatcccg cgctgcctgc gctggtcagt tgtggctcca 481 gcctgcaggg ccgctgcttc ctgcatgacc tagagcccca agggacagcc gtgcatctgg 541 cagcgccagc ctgcctcttc tcagcccacc ataaccggcc cgatgactgc cccgactgtg 601 tggccagccc attgggcacc cgtgtaactg tggttgagca aggccaggcc tcctatttct 661 acgtggcatc ctcactggac gcagccgtgg ctgccagctt cagcccacgc tcagtgtcta 721 tcaggcgtct caaggctgac gcctcgggat tcgcaccggg ctttgtggcg ttgtcagtgc 781 tgcccaagca tcttgtctcc tacagtattg aatacgtgca cagcttccac acgggagcct 841 tcgtatactt cctgactgta cagccggcca gcgtgacaga tgatcctagt gccctgcaca 901 cacgcctggc acggcttagc gccactgagc cagagttggg tgactatcgg gagctggtcc 961 tcgactgcag atttgctcca aaacgcaggc gccggggggc cccagaaggc ggacagccct 1021 accctgtgct gcgggtggcc cactccgctc cagtgggtgc ccaacttgcc actgagctga 1081 gcatcgccga gggccaggaa gtactatttg gggtctttgt gactggcaag gatggtggtc 1141 ctggcgtggg ccccaactct gtcgtctgtg ccttccccat tgacctgctg gacacactaa 1201 ttgatgaggg tgtggagcgc tgttgtgaat ccccagtcca tccaggcctc cggcgaggcc 1261 tcgacttctt ccagtcgccc agtttttgcc ccaacccgcc tggcctggaa gccctcagcc 1321 ccaacaccag ctgccgccac ttccctctgc tggtcagtag cagcttctca cgtgtggacc 1381 tattcaatgg gctgttggga ccagtacagg tcactgcatt gtatgtgaca cgccttgaca 1441 acgtcacagt ggcacacatg ggcacaatgg atgggcgtat cctgcaggtg gagctggtca 1501 ggtcactaaa ctacttgctg tatgtgtcca acttctcact gggtgacagt gggcagcccg 1561 tgcagcggga tgtcagtcgt cttggggacc acctactctt tgcctctggg gaccaggttt 1621 tccaggtacc tatccaaggc cctggctgcc gccacttcct gacctgtggg cgttgcctaa 1681 gggcatggca tttcatgggc tgtggctggt gtgggaacat gtgcggccag cagaaggagt 1741 gtcctggctc ctggcaacag gaccactgcc cacctaagct tactgagttc cacccccaca 1801 gtggacctct aaggggcagt acaaggctga ccctgtgtgg ctccaacttc taccttcacc 1861 cttctggtct ggtgcctgag ggaacccatc aggtcactgt gggccaaagt ccctgccggc 1921 cactgcccaa ggacagctca aaactcagac cagtgccccg gaaagacttt gtagaggagt 1981 ttgagtgtga actggagccc ttgggcaccc aggcagtggg gcctaccaac gtcagcctca 2041 ccgtgactaa catgccaccg ggcaagcact tccgggtaga cggcacctcc gtgctgagag 2101 gcttctcttt catggagcca gtgctgatag cagtgcaacc cctctttggc ccacgggcag 2161 gaggcacctg tctcactctt gaaggccaga gtctgtctgt aggcaccagc cgggctgtgc 2221 tggtcaatgg gactgagtgt ctgctagcac gggtcagtga ggggcagctt ttatgtgcca 2281 caccccctgg ggccacggtg gccagtgtcc cccttagcct gcaggtgggg ggtgcccagg 2341 tacctggttc ctggaccttc cagtacagag aagaccctgt cgtgctaagc atcagcccca 2401 actgtggcta catcaactcc cacatcacca tctgtggcca gcatctaact tcagcatggc 2461 acttagtgct gtcattccat gacgggctta gggcagtgga aagcaggtgt gagaggcagc 2521 ttccagagca gcagctgtgc cgccttcctg aatatgtggt ccgagacccc cagggatggg 2581 tggcagggaa tctgagtgcc cgaggggatg gagctgctgg ctttacactg cctggctttc 2641 gcttcctacc cccaccccat ccacccagtg ccaacctagt tccactgaag cctgaggagc 2701 atgccattaa gtttgagtat attgggctgg gcgctgtggc tgactgtgtg ggtatcaacg 2761 tgaccgtggg tggtgagagc tgccagcacg agttccgggg ggacatggtt gtctgccccc 2821 tgcccccatc cctgcagctt ggccaggatg gtgccccatt gcaggtctgc gtagatggtg 2881 aatgtcatat cctgggtaga gtggtgcggc cagggccaga tggggtccca cagagcacgc 2941 tccttggtat cctgctgcct ttgctgctgc ttgtggctgc actggcgact gcactggtct 3001 tcagctactg gtggcggagg aagcagctag ttcttcctcc caacctgaat gacctggcat 3061 ccctggacca gactgctgga gccacacccc tgcctattct gtactcgggc tctgactaca 3121 gaagtggcct tgcactccct gccattgatg gtctggattc caccacttgt gtccatggag 3181 catccttctc cgatagtgaa gatgaatcct gtgtgccact gctgcggaaa gagtccatcc 3241 agctaaggga cctggactct gcgctcttgg ctgaggtcaa ggatgtgctg attccccatg 3301 agcgggtggt cacccacagt gaccgagtca ttggcaaagg ccactttgga gttgtctacc 3361 acggagaata catagaccag gcccagaatc gaatccaatg tgccatcaag tcactaagtc 3421 gcatcacaga gatgcagcag gtggaggcct tcctgcgaga ggggctgctc atgcgtggcc 3481 tgaaccaccc gaatgtgctg gctctcattg gtatcatgtt gccacctgag ggcctgcccc 3541 atgtgctgct gccctatatg tgccacggtg acctgctcca gttcatccgc tcacctcagc 3601 ggaaccccac cgtgaaggac ctcatcagct ttggcctgca ggtagcccgc ggcatggagt 3661 acctggcaga gcagaagttt gtgcacaggg acctggctgc gcggaactgc atgctggacg 3721 agtcattcac agtcaaggtg gctgactttg gtttggcccg cgacatcctg gacagggagt 3781 actatagtgt tcaacagcat cgccacgctc gcctacctgt gaagtggatg gcgctggaga 3841 gcctgcagac ctatagattt accaccaagt ctgatgtgtg gtcatttggt gtgctgctgt 3901 gggaactgct gacacggggt gccccaccat accgccacat tgaccctttt gaccttaccc 3961 acttcctggc ccagggtcgg cgcctgcccc agcctgagta ttgccctgat tctctgtacc 4021 aagtgatgca gcaatgctgg gaggcagacc cagcagtgcg acccaccttc agagtactag 4081 tgggggaggt ggagcagata gtgtctgcac tgcttgggga ccattatgtg cagctgccag 4141 caacctacat gaacttgggc cccagcacct cgcatgagat gaatgtgcgt ccagaacagc 4201 cgcagttctc acccatgcca gggaatgtac gccggccccg gccactctca gagcctcctc 4261 ggcccacttt gccaactttc ttgtacaaag ttggcattat aagaaagcat tgcttatcaa 4321 tttgttgcaa cgaac