Construct: ORF ccsbBroadEn_14703

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019056.1_s300c1, BRDN0000458674
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MST1R (4486)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4486 MST1R macrophage stimulating 1 re... NM_002447.4 100% 100%
2 human 4486 MST1R macrophage stimulating 1 re... XM_005265170.4 99.9% 99.9% 2439_2441delGCA
3 human 4486 MST1R macrophage stimulating 1 re... XM_011533739.2 97% 97% 2439_2441delGCA;2650_2651ins120
4 human 4486 MST1R macrophage stimulating 1 re... NM_001244937.3 96.5% 96.5% 2647_2648ins147
5 human 4486 MST1R macrophage stimulating 1 re... XM_011533740.2 96.4% 96.4% 2439_2441delGCA;2650_2651ins147
6 human 4486 MST1R macrophage stimulating 1 re... XM_011533741.2 95% 95% 2439_2441delGCA;3066_3067ins207
7 human 4486 MST1R macrophage stimulating 1 re... XM_011533742.2 94.4% 89.4% 2439_2441delGCA;3813_3814ins137;3972_3973ins94
8 human 4486 MST1R macrophage stimulating 1 re... XR_001740155.1 93.3% (many diffs)
9 human 4486 MST1R macrophage stimulating 1 re... XM_011533743.2 92.7% 92.7% 2439_2441delGCA;3646_3647ins303
10 human 4486 MST1R macrophage stimulating 1 re... NM_001318913.1 92.4% 92.4% 1229_1230ins318
11 human 4486 MST1R macrophage stimulating 1 re... XM_011533744.2 92.3% 92.3% 1229_1230ins318;2121_2123delGCA
12 human 4486 MST1R macrophage stimulating 1 re... XR_940428.2 86.8% (many diffs)
13 human 4486 MST1R macrophage stimulating 1 re... NR_134919.2 86.6% 1_264del;3469_3470ins64;4401_4708del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
4269
ORF length:
4200
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat ggagctcctc ccgccgctgc ctcagtcctt cctgttgctg ctgctgttgc
121ctgccaagcc cgcggcgggc gaggactggc agtgcccgcg caccccctac gcggcctctc
181gcgactttga cgtgaagtac gtggtgccca gcttctccgc cggaggcctg gtacaggcca
241tggtgaccta cgagggcgac agaaatgaga gtgctgtgtt tgtagccata cgcaatcgcc
301tgcatgtgct tgggcctgac ctgaagtctg tccagagcct ggccacgggc cctgctggag
361accctggctg ccagacgtgt gcagcctgtg gcccaggacc ccacggccct cccggtgaca
421cagacacaaa ggtgctggtg ctggatcccg cgctgcctgc gctggtcagt tgtggctcca
481gcctgcaggg ccgctgcttc ctgcatgacc tagagcccca agggacagcc gtgcatctgg
541cagcgccagc ctgcctcttc tcagcccacc ataaccggcc cgatgactgc cccgactgtg
601tggccagccc attgggcacc cgtgtaactg tggttgagca aggccaggcc tcctatttct
661acgtggcatc ctcactggac gcagccgtgg ctgccagctt cagcccacgc tcagtgtcta
721tcaggcgtct caaggctgac gcctcgggat tcgcaccggg ctttgtggcg ttgtcagtgc
781tgcccaagca tcttgtctcc tacagtattg aatacgtgca cagcttccac acgggagcct
841tcgtatactt cctgactgta cagccggcca gcgtgacaga tgatcctagt gccctgcaca
901cacgcctggc acggcttagc gccactgagc cagagttggg tgactatcgg gagctggtcc
961tcgactgcag atttgctcca aaacgcaggc gccggggggc cccagaaggc ggacagccct
1021accctgtgct gcgggtggcc cactccgctc cagtgggtgc ccaacttgcc actgagctga
1081gcatcgccga gggccaggaa gtactatttg gggtctttgt gactggcaag gatggtggtc
1141ctggcgtggg ccccaactct gtcgtctgtg ccttccccat tgacctgctg gacacactaa
1201ttgatgaggg tgtggagcgc tgttgtgaat ccccagtcca tccaggcctc cggcgaggcc
1261tcgacttctt ccagtcgccc agtttttgcc ccaacccgcc tggcctggaa gccctcagcc
1321ccaacaccag ctgccgccac ttccctctgc tggtcagtag cagcttctca cgtgtggacc
1381tattcaatgg gctgttggga ccagtacagg tcactgcatt gtatgtgaca cgccttgaca
1441acgtcacagt ggcacacatg ggcacaatgg atgggcgtat cctgcaggtg gagctggtca
1501ggtcactaaa ctacttgctg tatgtgtcca acttctcact gggtgacagt gggcagcccg
1561tgcagcggga tgtcagtcgt cttggggacc acctactctt tgcctctggg gaccaggttt
1621tccaggtacc tatccaaggc cctggctgcc gccacttcct gacctgtggg cgttgcctaa
1681gggcatggca tttcatgggc tgtggctggt gtgggaacat gtgcggccag cagaaggagt
1741gtcctggctc ctggcaacag gaccactgcc cacctaagct tactgagttc cacccccaca
1801gtggacctct aaggggcagt acaaggctga ccctgtgtgg ctccaacttc taccttcacc
1861cttctggtct ggtgcctgag ggaacccatc aggtcactgt gggccaaagt ccctgccggc
1921cactgcccaa ggacagctca aaactcagac cagtgccccg gaaagacttt gtagaggagt
1981ttgagtgtga actggagccc ttgggcaccc aggcagtggg gcctaccaac gtcagcctca
2041ccgtgactaa catgccaccg ggcaagcact tccgggtaga cggcacctcc gtgctgagag
2101gcttctcttt catggagcca gtgctgatag cagtgcaacc cctctttggc ccacgggcag
2161gaggcacctg tctcactctt gaaggccaga gtctgtctgt aggcaccagc cgggctgtgc
2221tggtcaatgg gactgagtgt ctgctagcac gggtcagtga ggggcagctt ttatgtgcca
2281caccccctgg ggccacggtg gccagtgtcc cccttagcct gcaggtgggg ggtgcccagg
2341tacctggttc ctggaccttc cagtacagag aagaccctgt cgtgctaagc atcagcccca
2401actgtggcta catcaactcc cacatcacca tctgtggcca gcatctaact tcagcatggc
2461acttagtgct gtcattccat gacgggctta gggcagtgga aagcaggtgt gagaggcagc
2521ttccagagca gcagctgtgc cgccttcctg aatatgtggt ccgagacccc cagggatggg
2581tggcagggaa tctgagtgcc cgaggggatg gagctgctgg ctttacactg cctggctttc
2641gcttcctacc cccaccccat ccacccagtg ccaacctagt tccactgaag cctgaggagc
2701atgccattaa gtttgagtat attgggctgg gcgctgtggc tgactgtgtg ggtatcaacg
2761tgaccgtggg tggtgagagc tgccagcacg agttccgggg ggacatggtt gtctgccccc
2821tgcccccatc cctgcagctt ggccaggatg gtgccccatt gcaggtctgc gtagatggtg
2881aatgtcatat cctgggtaga gtggtgcggc cagggccaga tggggtccca cagagcacgc
2941tccttggtat cctgctgcct ttgctgctgc ttgtggctgc actggcgact gcactggtct
3001tcagctactg gtggcggagg aagcagctag ttcttcctcc caacctgaat gacctggcat
3061ccctggacca gactgctgga gccacacccc tgcctattct gtactcgggc tctgactaca
3121gaagtggcct tgcactccct gccattgatg gtctggattc caccacttgt gtccatggag
3181catccttctc cgatagtgaa gatgaatcct gtgtgccact gctgcggaaa gagtccatcc
3241agctaaggga cctggactct gcgctcttgg ctgaggtcaa ggatgtgctg attccccatg
3301agcgggtggt cacccacagt gaccgagtca ttggcaaagg ccactttgga gttgtctacc
3361acggagaata catagaccag gcccagaatc gaatccaatg tgccatcaag tcactaagtc
3421gcatcacaga gatgcagcag gtggaggcct tcctgcgaga ggggctgctc atgcgtggcc
3481tgaaccaccc gaatgtgctg gctctcattg gtatcatgtt gccacctgag ggcctgcccc
3541atgtgctgct gccctatatg tgccacggtg acctgctcca gttcatccgc tcacctcagc
3601ggaaccccac cgtgaaggac ctcatcagct ttggcctgca ggtagcccgc ggcatggagt
3661acctggcaga gcagaagttt gtgcacaggg acctggctgc gcggaactgc atgctggacg
3721agtcattcac agtcaaggtg gctgactttg gtttggcccg cgacatcctg gacagggagt
3781actatagtgt tcaacagcat cgccacgctc gcctacctgt gaagtggatg gcgctggaga
3841gcctgcagac ctatagattt accaccaagt ctgatgtgtg gtcatttggt gtgctgctgt
3901gggaactgct gacacggggt gccccaccat accgccacat tgaccctttt gaccttaccc
3961acttcctggc ccagggtcgg cgcctgcccc agcctgagta ttgccctgat tctctgtacc
4021aagtgatgca gcaatgctgg gaggcagacc cagcagtgcg acccaccttc agagtactag
4081tgggggaggt ggagcagata gtgtctgcac tgcttgggga ccattatgtg cagctgccag
4141caacctacat gaacttgggc cccagcacct cgcatgagat gaatgtgcgt ccagaacagc
4201cgcagttctc acccatgcca gggaatgtac gccggccccg gccactctca gagcctcctc
4261ggcccacttt gccaactttc ttgtacaaag ttggcattat aagaaagcat tgcttatcaa
4321tttgttgcaa cgaac

Download FASTA (ORF) (Full)