Transcript: Human XR_001740155.1

PREDICTED: Homo sapiens macrophage stimulating 1 receptor (MST1R), transcript variant X5, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MST1R (4486)
Length:
4156
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001740155.1
NBCI Gene record:
MST1R (4486)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001740155.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000003110 GCTGGCTCTCATTGGTATCAT pLKO.1 3455 3UTR 100% 5.625 7.875 N MST1R n/a
2 TRCN0000315066 GCTGGCTCTCATTGGTATCAT pLKO_005 3455 3UTR 100% 5.625 7.875 N MST1R n/a
3 TRCN0000121254 GCTGGTCAGGTCACTAAACTA pLKO.1 1448 3UTR 100% 5.625 7.875 N MST1R n/a
4 TRCN0000121160 CATGCCATTAAGTTTGAGTAT pLKO.1 2658 3UTR 100% 4.950 6.930 N MST1R n/a
5 TRCN0000121159 CGACTGCAGATTTGCTCCAAA pLKO.1 917 3UTR 100% 4.950 6.930 N MST1R n/a
6 TRCN0000121148 GCGTAGATGGTGAATGTCATA pLKO.1 2827 3UTR 100% 4.950 6.930 N MST1R n/a
7 TRCN0000121255 CGAGTCATTCACAGTCAAGGT pLKO.1 3677 3UTR 100% 2.640 3.696 N MST1R n/a
8 TRCN0000121149 GCATTGTATGTGACACGCCTT pLKO.1 1371 3UTR 100% 2.160 3.024 N MST1R n/a
9 TRCN0000199467 GCCTGAGTATTGCCCTGATTC pLKO.1 3950 3UTR 100% 10.800 8.640 N MST1R n/a
10 TRCN0000121150 CGTGTAACTGTGGTTGAGCAA pLKO.1 576 3UTR 100% 2.640 2.112 N MST1R n/a
11 TRCN0000315068 GCCATTAAGTTTGAGTATATT pLKO_005 2661 3UTR 100% 15.000 10.500 N MST1R n/a
12 TRCN0000199246 CATGTGCTGCTGCCCTATATG pLKO.1 3498 3UTR 100% 13.200 9.240 N MST1R n/a
13 TRCN0000003106 AGGCCCAGAATCGAATCCAAT pLKO.1 3337 3UTR 100% 4.950 3.465 N MST1R n/a
14 TRCN0000121256 AGGGAGTACTATAGTGTTCAA pLKO.1 3732 3UTR 100% 4.950 3.465 N MST1R n/a
15 TRCN0000121161 CAATGTGCCATCAAGTCACTA pLKO.1 3354 3UTR 100% 4.950 3.465 N MST1R n/a
16 TRCN0000315065 CAATGTGCCATCAAGTCACTA pLKO_005 3354 3UTR 100% 4.950 3.465 N MST1R n/a
17 TRCN0000121253 GCATCCTTCTCCGATAGTGAA pLKO.1 3138 3UTR 100% 4.950 3.465 N MST1R n/a
18 TRCN0000199886 GCTGACTGTGTGGGTATCAAC pLKO.1 2697 3UTR 100% 4.950 3.465 N MST1R n/a
19 TRCN0000121252 TCACTAAACTACTTGCTGTAT pLKO.1 1458 3UTR 100% 4.950 3.465 N MST1R n/a
20 TRCN0000199511 GCGTGACAGATGATCCTAGTG pLKO.1 826 3UTR 100% 4.050 2.835 N MST1R n/a
21 TRCN0000003107 CCTCCTATTTCTACGTGGCAT pLKO.1 604 3UTR 100% 2.640 1.848 N MST1R n/a
22 TRCN0000121151 GCCAGCATCTAACTTCAGCAT pLKO.1 2392 3UTR 100% 2.640 1.848 N MST1R n/a
23 TRCN0000350482 GCCAGCATCTAACTTCAGCAT pLKO_005 2392 3UTR 100% 2.640 1.848 N MST1R n/a
24 TRCN0000195385 CGACAGAAATGAGAGTGCTGT pLKO.1 212 3UTR 100% 2.640 1.584 N MST1R n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001740155.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14703 pDONR223 0% 93.3% None (many diffs) n/a
2 ccsbBroad304_14703 pLX_304 0% 93.3% V5 (many diffs) n/a
3 TRCN0000472925 CTACATAGTGTTTTCCCTGGGCCG pLX_317 9.4% 93.3% V5 (not translated due to prior stop codon) (many diffs) n/a
4 TRCN0000487813 ATCGCGGACGGGTAACACGACAAT pLX_317 5.2% 93.2% V5 (many diffs) n/a
5 TRCN0000488067 CAGCGCATTGGAACGAACTAACGC pLX_317 6.8% 93.2% V5 (not translated due to prior stop codon) (many diffs) n/a
6 TRCN0000489728 CGAACTACTTACCTAATCGTGGGA pLX_317 22% 24.3% V5 (not translated due to prior stop codon) (many diffs) n/a
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