Construct: ORF ccsbBroadEn_14708

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006149.1_s300c1, BRDN0000386630
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NCBP1 (4686)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4686 NCBP1 nuclear cap binding protein... NM_002486.5 99.9% 100% 1431T>C
2 human 4686 NCBP1 nuclear cap binding protein... NM_001351504.1 91.1% 90.5% (many diffs)
3 human 4686 NCBP1 nuclear cap binding protein... NM_001351505.1 75.9% 65.6% 0_1ins478;201_202ins92;861T>C
4 human 4686 NCBP1 nuclear cap binding protein... NM_001351506.1 75.9% 65.6% 0_1ins478;201_202ins92;861T>C
5 human 4686 NCBP1 nuclear cap binding protein... NM_001351507.1 53.1% 53.1% 0_1ins1110;321T>C
6 mouse 433702 Ncbp1 nuclear cap binding protein... NM_001033201.3 89.4% 97.9% (many diffs)
7 mouse 433702 Ncbp1 nuclear cap binding protein... XM_017320296.1 76.9% 84.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2436
ORF length:
2370
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC GCGGCGGCGG CACAGCGACG AGAACGACGG TGGGCAGCCT CACAAAAGGA
121GAAAGACCTC TGATGCAAAT GAAACTGAAG ATCATTTGGA ATCTTTAATA TGTAAAGTAG
181GAGAAAAGAG TGCCTGCTCT TTGGAGAGCA ACCTAGAAGG CTTGGCTGGT GTTTTGGAAG
241CTGATCTTCC TAACTACAAG AGCAAGATCT TAAGGCTTCT TTGTACAGTT GCACGCCTAT
301TACCTGAGAA GCTGACAATT TATACAACAT TAGTTGGACT ACTGAATGCC AGGAATTACA
361ATTTTGGTGG AGAATTTGTA GAAGCCATGA TTCGTCAACT TAAAGAATCA TTGAAAGCAA
421ACAATTATAA TGAAGCCGTG TATTTGGTCC GTTTTTTATC TGATCTTGTG AATTGTCATG
481TGATTGCCGC CCCATCAATG GTTGCTATGT TTGAAAATTT TGTAAGCGTA ACTCAGGAAG
541AAGATGTACC TCAGGTGCGA CGAGATTGGT ATGTGTATGC ATTTCTGTCA TCTTTGCCCT
601GGGTTGGAAA GGAGTTGTAC GAAAAGAAAG ATGCAGAGAT GGACCGCATC TTTGCCAACA
661CTGAAAGCTA TCTTAAAAGA CGCCAAAAGA CTCATGTACC CATGTTACAG GTATGGACTG
721CTGATAAACC ACATCCACAA GAAGAGTATT TAGATTGCCT GTGGGCCCAG ATTCAGAAAT
781TGAAAAAGGA TCGCTGGCAG GAACGGCACA TCCTAAGACC TTATCTTGCC TTTGACAGCA
841TCCTGTGTGA AGCACTGCAG CACAATCTGC CTCCTTTTAC ACCACCTCCT CACACTGAAG
901ATTCAGTGTA CCCAATGCCA AGGGTCATCT TCAGAATGTT TGATTACACA GATGATCCCG
961AGGGTCCTGT CATGCCAGGG AGTCATTCAG TGGAAAGATT TGTAATAGAA GAGAATCTTC
1021ACTGCATCAT TAAGTCCCAC TGGAAGGAAA GGAAGACTTG TGCTGCACAG TTAGTGAGCT
1081ATCCAGGGAA GAACAAGATC CCCTTGAACT ACCACATAGT TGAGGTGATC TTTGCAGAGC
1141TGTTTCAACT TCCAGCACCC CCTCACATTG ATGTGATGTA CACAACACTC CTCATTGAAC
1201TGTGCAAACT TCAACCTGGC TCTCTACCCC AAGTTCTTGC ACAGGCAACT GAAATGCTAT
1261ACATGCGTTT GGACACAATG AACACTACCT GTGTAGACAG GTTTATTAAT TGGTTTTCTC
1321ATCATCTAAG TAACTTCCAG TTCCGTTGGA GCTGGGAAGA TTGGTCAGAT TGTCTTAGTC
1381AAGATCCTGA AAGTCCCAAA CCGAAGTTTG TAAGAGAAGT TCTAGAAAAA TGTATGAGGT
1441TGTCTTACCA TCAGCGTATA TTAGATATTG TTCCTCCTAC CTTCTCAGCT CTGTGCCCTG
1501Caaacccaac ctgcatttac aagtatggag atgaaagtag caattctctt cctggacatt
1561ctgttgccct ctgtttagct gttgccttta aaagtaaggc aaccaatgat gaaatcttca
1621gcattctgaa agatgtacca aatcctaacc aggatgatga cgacgatgaa ggattcagtt
1681ttaacccatt gaaaatagaa gtctttgtac agactctgct acacttggca gccaaatcat
1741tcagccactc cttcagtgct cttgcaaagt ttcatgaagt cttcaaaacc ctagctgaaa
1801gtgatgaagg aaagttacat gtgctaagag ttatgtttga ggtctggagg aaccatccac
1861agatgattgc tgtactagtg gataagatga ttcgtacaca aatagttgat tgtgctgccg
1921tagcaaattg gatcttctct tcagaactat ctcgtgactt taccagattg tttgtttggg
1981aaattttgca ctctacaatt cgtaagatga acaaacatgt cctgaagatc cagaaagagc
2041tggaagaagc taaagagaaa cttgctaggc aacacaaacg gcgaagtgat gatgacgaca
2101gaagcagtga caggaaagac ggggttcttg aggaacaaat agaacgactt caggaaaaag
2161tggaatctgc tcagagtgaa caaaagaatc ttttcctcgt tatatttcag cggtttatca
2221tgatcttgac cgagcaccta gtacgatgcg aaactgatgg gaccagtgta ttaacaccat
2281ggtataagaa ctgtatagag aggctgcagc agatcttcct acagcatcac caaataatcc
2341agcagtacat ggtgaccctg gagaaccttc tcttcactgc tgaattagac cctcatatct
2401tggccgtgtt ccagcagttc tgtgccctgc aggcctaccc aactttcttg tacaaagttg
2461gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)