Construct: ORF ccsbBroadEn_14736

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019007.1_s300c1, BRDN0000458625
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDGFRB (5159)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5159 PDGFRB platelet derived growth fac... NM_002609.4 100% 100%
2 human 5159 PDGFRB platelet derived growth fac... NM_001355016.2 94.2% 94.2% 0_1ins192
3 human 5159 PDGFRB platelet derived growth fac... NM_001355017.2 83.5% 81.8% 0_1ins517;114_147del
4 mouse 18596 Pdgfrb platelet derived growth fac... NM_008809.2 83.1% 85.4% (many diffs)
5 mouse 18596 Pdgfrb platelet derived growth fac... NM_001146268.1 83% 85.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3387
ORF length:
3318
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcaccat gcggcttccg ggtgcgatgc cagctctggc cctcaaaggc gagctgctgt
121tgctgtctct cctgttactt ctggaaccac agatctctca gggcctggtc gtcacacccc
181cggggccaga gcttgtcctc aatgtctcca gcaccttcgt tctgacctgc tcgggttcag
241ctccggtggt gtgggaacgg atgtcccagg agcccccaca ggaaatggcc aaggcccagg
301atggcacctt ctccagcgtg ctcacactga ccaacctcac tgggctagac acgggagaat
361acttttgcac ccacaatgac tcccgtggac tggagaccga tgagcggaaa cggctctaca
421tctttgtgcc agatcccacc gtgggcttcc tccctaatga tgccgaggaa ctattcatct
481ttctcacgga aataactgag atcaccattc catgccgagt aacagaccca cagctggtgg
541tgacactgca cgagaagaaa ggggacgttg cactgcctgt cccctatgat caccaacgtg
601gcttttctgg tatctttgag gacagaagct acatctgcaa aaccaccatt ggggacaggg
661aggtggattc tgatgcctac tatgtctaca gactccaggt gtcatccatc aacgtctctg
721tgaacgcagt gcagactgtg gtccgccagg gtgagaacat caccctcatg tgcattgtga
781tcgggaatga ggtggtcaac ttcgagtgga catacccccg caaagaaagt gggcggctgg
841tggagccggt gactgacttc ctcttggata tgccttacca catccgctcc atcctgcaca
901tccccagtgc cgagttagaa gactcgggga cctacacctg caatgtgacg gagagtgtga
961atgaccatca ggatgaaaag gccatcaaca tcaccgtggt tgagagcggc tacgtgcggc
1021tcctgggaga ggtgggcaca ctacaatttg ctgagctgca tcggagccgg acactgcagg
1081tagtgttcga ggcctaccca ccgcccactg tcctgtggtt caaagacaac cgcaccctgg
1141gcgactccag cgctggcgaa atcgccctgt ccacgcgcaa cgtgtcggag acccggtatg
1201tgtcagagct gacactggtt cgcgtgaagg tggcagaggc tggccactac accatgcggg
1261ccttccatga ggatgctgag gtccagctct ccttccagct acagatcaat gtccctgtcc
1321gagtgctgga gctaagtgag agccaccctg acagtgggga acagacagtc cgctgtcgtg
1381gccggggcat gccccagccg aacatcatct ggtctgcctg cagagacctc aaaaggtgtc
1441cacgtgagct gccgcccacg ctgctgggga acagttccga agaggagagc cagctggaga
1501ctaacgtgac gtactgggag gaggagcagg agtttgaggt ggtgagcaca ctgcgtctgc
1561agcacgtgga tcggccactg tcggtgcgct gcacgctgcg caacgctgtg ggccaggaca
1621cgcaggaggt catcgtggtg ccacactcct tgccctttaa ggtggtggtg atctcagcca
1681tcctggccct ggtggtgctc accatcatct cccttatcat cctcatcatg ctttggcaga
1741agaagccacg ttacgagatc cgatggaagg tgattgagtc tgtgagctct gacggccatg
1801agtacatcta cgtggacccc atgcagctgc cctatgactc cacgtgggag ctgccgcggg
1861accagcttgt gctgggacgc accctcggct ctggggcctt tgggcaggtg gtggaggcca
1921cggctcatgg cctgagccat tctcaggcca cgatgaaagt ggccgtcaag atgcttaaat
1981ccacagcccg cagcagtgag aagcaagccc ttatgtcgga gctgaagatc atgagtcacc
2041ttgggcccca cctgaacgtg gtcaacctgt tgggggcctg caccaaagga ggacccatct
2101atatcatcac tgagtactgc cgctacggag acctggtgga ctacctgcac cgcaacaaac
2161acaccttcct gcagcaccac tccgacaagc gccgcccgcc cagcgcggag ctctacagca
2221atgctctgcc cgttgggctc cccctgccca gccatgtgtc cttgaccggg gagagcgacg
2281gtggctacat ggacatgagc aaggacgagt cggtggacta tgtgcccatg ctggacatga
2341aaggagacgt caaatatgca gacatcgagt cctccaacta catggcccct tacgataact
2401acgttccctc tgcccctgag aggacctgcc gagcaacttt gatcaacgag tctccagtgc
2461taagctacat ggacctcgtg ggcttcagct accaggtggc caatggcatg gagtttctgg
2521cctccaagaa ctgcgtccac agagacctgg cggctaggaa cgtgctcatc tgtgaaggca
2581agctggtcaa gatctgtgac tttggcctgg ctcgagacat catgcgggac tcgaattaca
2641tctccaaagg cagcaccttt ttgcctttaa agtggatggc tccggagagc atcttcaaca
2701gcctctacac caccctgagc gacgtgtggt ccttcgggat cctgctctgg gagatcttca
2761ccttgggtgg caccccttac ccagagctgc ccatgaacga gcagttctac aatgccatca
2821aacggggtta ccgcatggcc cagcctgccc atgcctccga cgagatctat gagatcatgc
2881agaagtgctg ggaagagaag tttgagattc ggcccccctt ctcccagctg gtgctgcttc
2941tcgagagact gttgggcgaa ggttacaaaa agaagtacca gcaggtggat gaggagtttc
3001tgaggagtga ccacccagcc atccttcggt cccaggcccg cttgcctggg ttccatggcc
3061tccgatctcc cctggacacc agctccgtcc tctatactgc cgtgcagccc aatgagggtg
3121acaacgacta tatcatcccc ctgcctgacc ccaaacccga ggttgctgac gagggcccac
3181tggagggttc ccccagccta gccagctcca ccctgaatga agtcaacacc tcctcaacca
3241tctcctgtga cagccccctg gagccccagg acgaaccaga gccagagccc cagcttgagc
3301tccaggtgga gccggagcca gagctggaac agttgccgga ttcggggtgc cctgcgcctc
3361gggcggaagc agaggatagc ttcctgttgc caactttctt gtacaaagtt ggcattataa
3421gaaagcattg cttatcaatt tgttgcaacg aac

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