Construct: ORF ccsbBroadEn_14822
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018904.1_s300c1, BRDN0000458200
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ALDH18A1 (5832)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323413.2 | 99% | 29.8% | (many diffs) |
| 2 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323414.2 | 99% | 29.8% | (many diffs) |
| 3 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_002860.4 | 99% | 29.8% | (many diffs) |
| 4 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001017423.2 | 98.8% | 29.8% | (many diffs) |
| 5 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323415.2 | 98.8% | 29.8% | (many diffs) |
| 6 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | XM_024448094.1 | 94.9% | 28.5% | (many diffs) |
| 7 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | XM_024448095.1 | 94.9% | 28.5% | (many diffs) |
| 8 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | XM_024448096.1 | 94.8% | 28.6% | (many diffs) |
| 9 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323417.2 | 94.6% | 25.4% | (many diffs) |
| 10 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323412.2 | 85% | 15.8% | (many diffs) |
| 11 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323416.2 | 85% | 15.8% | (many diffs) |
| 12 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323418.2 | 84.9% | 15.8% | (many diffs) |
| 13 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | XM_024448097.1 | 81.6% | 15.1% | (many diffs) |
| 14 | human | 5832 | ALDH18A1 | aldehyde dehydrogenase 18 f... | NM_001323419.2 | 72.4% | 3.1% | (many diffs) |
| 15 | mouse | 56454 | Aldh18a1 | aldehyde dehydrogenase 18 f... | NM_019698.2 | 87.1% | 27.2% | (many diffs) |
| 16 | mouse | 56454 | Aldh18a1 | aldehyde dehydrogenase 18 f... | NM_153554.2 | 86.9% | 27.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 809
- ORF length:
- 711
- Sequence:
-
1 CCGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG TTGAGTCAAG TTTACCGCTG 121 TGGGTTCCAG CCCTTCAACC AACATCTTCT GCCCTGGGTC AAGTGTACAA CCGTCTTCAG 181 ATCTCATTGT ATCCAGCCTT CAGTCATCAG ACATGTTCGT TCTTGGAGCA ACATCCCGTT 241 TATCACTGTA CCCCTCAGTC GTACACATGG CAAGTCCTTC GCCCACCGCA GTGAGCTGAA 301 GCATGCCAAG AGAATCGTGG TGAAGCTCGG CAGTGCCGTG GTGACCCGAG GGGATGAATG 361 TGGCCTGGCC CTGGGGCGCT TGGCATCTAT TGTTGAGCAG GTATCAGTGC TGCAGAATCA 421 GGGCAGAGAG ATGATGCTGG TGACCAGTGG AGCCGTAGCC TTTGGCAAAC AACGCTTGCG 481 CCATGAGATC CTTCTGTCTC AGAGCGTGCG GCAGGCCCTC CACTCGGGGC AGAACCAGCT 541 GAAAGAAATG GCAATTCCAG TCTTAGAGGC ACGAGCCTGT GCAGCTGCCG GACAGAGTGG 601 GCTGATGGCC TTGTATGAGG CTATGTTTAC CCAGTACAGC ATCTGTGCTG CCCAGATTTT 661 GGTGACCAAT TTGGATTTCC ATGATGAGCA GAAGCGCCGG AACCTCAATG GAACACTTCA 721 TGAACTCCTT AGAATGAACA TTGTCCCCAT TGTCAACACA AATGATGCTG TTGTCCCCCC 781 AGCTGAGCCC AACAGTGACC TGCAGGGGTA AATGTTATTA GTGTTAAAGA TAATGATAGC 841 CTGCTGCCCG ACTGGCTGTG AAATGAAACT GATCTCTTGA TGTCTTTCAG ATGTAGAAGC 901 CTTTTGACAG ccccccaggt tcagatgatg caaagcttat tgatatattt tatcccggag 961 atcagcagtc tgtgacattt ggaaccaagt ctagagtggg aatgggtggc atggaagcca 1021 aggtgaaagc agccctctgg gctttgcaag gtggcacttc tgttgttatt gccaatggaa 1081 cccacccaaa ggtgtctggg cacgtcatca cagacattgt ggaggggaag aaagttggta 1141 ccttcttttc agaagtaaag cctgcaggcc ctactgttga gcagcaggga gaaatggcgc 1201 gatctggagg aaggatgttg gccaccttgg aacctgagca gagagcagaa attatccatc 1261 atctggctga tctgttgacg gaccagcgtg atgagatcct gttagccaac aaaaaagact 1321 tggaggaggc agaggggaga cttgcagctc ctctgctgaa acgtttaagc ctctccacat 1381 ccaaattgaa cagcctggcc atcggtctgc gacagatcgc agcctcctcc caggacagcg 1441 tgggacgtgt tttgcgccgc acccgaatcg ccaaaaactt ggaactggaa caagtgactg 1501 tcccaattgg agttctgctg gtgatctttg aatctcgtcc tgactgtcta ccccaggtgg 1561 cagctttggc tatcgcaagt ggcaatggct tgttactcaa aggagggaag gaggctgcac 1621 acagcaaccg gattctccac ctcctgaccc aggaggctct ctcaatccat GGAGTCAAGG 1681 GAGCCCGTGC AACTGGTGGA TTCCAAGAGA AGAAGTTGAA GATCTTTGCC GCTTGACCAA 1741 AATGATAGAT CTGATCATTC CACGTTGCTC TTCCCCAGCT GTCCAGAGAC ATCCAGAAAG 1801 CTGCTAAGGG GATCCCAGTG ATGGGGCACA GCGAAGGGAT CTGTCACATG TATGTGGATT 1861 CCGAGGCCAG TGTTGATAAG GTCACCAGGC TAGTCAGAGA CTCTAAATGT GAATATCCAG 1921 CTGCCTGTAA TGCTTTGGAG ACTTTGTTAA TCCACCGGGA TCTGCTCAGG ACACCATTAT 1981 TTGACCAGAT CATTGATATG CTGAGAGTGG AACAGGTAAA AATTCATGCA GGCCCCAAAT 2041 TTGCCTCCTA TCTGACCTTC AGCCCCTCCG AAGTGAAGTC ACTCCGAACT GAGTATGGGG 2101 ACCTGGAATT ATGCATTGAA GTAGTGGACA ACGTTCAGGA TGCCATTGAC CACATCCACA 2161 AGTATGGCAG CTCCCACACG GATGTCATCG TCACAGAGGA CGAAAACACA GCGGAGTTCT 2221 TCCTGCAGCA CGTAGACAGT GCCTGTGTGT TCTGGAATGC CAGCACTCGC TTTTCTGATG 2281 GTTACCGCTT TGGACTGGGA GCTGAAGTGG GAATCAGTAC ATCGAGAATC CACGCCCGGG 2341 GACCAGTAGG ACTTGAGGGA CTGCTTACTA CTAAGTGGCT GCTGCGAGGG AAGGACCACG 2401 TGGTCTCAGA TTTCTCAGAG CATGGAAGTT TAAAATATCT TCATGAGAAC CTCCCTATTC 2461 CTCAGAGAAA CACCAACTTG CCAACTTTCT TGTACAAAGT TGGCATTATA AGAAAGCATT 2521 GCTTATCAAT TTGTTGCAAC GAACAGGTCA CTATCAGTCA AAATAAAATC ATTATTTGCC 2581 CATACTC