Construct: ORF ccsbBroadEn_14857

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009551.1_s300c1, BRDN0000457059
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
TCF3 (6929)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6929 TCF3 transcription factor 3 NM_001136139.4 98.1% 15% (many diffs)
2 human 6929 TCF3 transcription factor 3 NM_001351779.2 98.1% 15% (many diffs)
3 human 6929 TCF3 transcription factor 3 XM_011528225.2 98% 15% (many diffs)
4 human 6929 TCF3 transcription factor 3 XM_011528226.2 97.9% 15% (many diffs)
5 human 6929 TCF3 transcription factor 3 NM_003200.5 96.6% 14.9% (many diffs)
6 human 6929 TCF3 transcription factor 3 XM_017027181.1 96.6% 14.9% (many diffs)
7 human 6929 TCF3 transcription factor 3 NM_001351778.2 96.4% 14.9% (many diffs)
8 human 6929 TCF3 transcription factor 3 XM_011528223.3 96.4% 14.9% (many diffs)
9 human 6929 TCF3 transcription factor 3 XM_006722855.4 94.4% 15% (many diffs)
10 human 6929 TCF3 transcription factor 3 XM_011528220.2 94.4% 15% (many diffs)
11 human 6929 TCF3 transcription factor 3 XM_017027178.1 94.4% 15% (many diffs)
12 human 6929 TCF3 transcription factor 3 XM_006722857.4 94.4% 15% (many diffs)
13 human 6929 TCF3 transcription factor 3 XM_006722858.3 94.4% 15% (many diffs)
14 human 6929 TCF3 transcription factor 3 XM_011528221.2 94.4% 15% (many diffs)
15 human 6929 TCF3 transcription factor 3 XM_017027179.2 94.3% 15% (many diffs)
16 human 6929 TCF3 transcription factor 3 XM_011528216.2 93% 14.9% (many diffs)
17 human 6929 TCF3 transcription factor 3 XM_017027177.2 93% 14.9% (many diffs)
18 human 6929 TCF3 transcription factor 3 XM_011528219.2 92.9% 14.9% (many diffs)
19 human 6929 TCF3 transcription factor 3 XM_024451679.1 92.8% 14.3% (many diffs)
20 human 6929 TCF3 transcription factor 3 XM_011528227.3 91.3% 11.6% (many diffs)
21 human 6929 TCF3 transcription factor 3 XM_024451675.1 90.8% 14.4% (many diffs)
22 human 6929 TCF3 transcription factor 3 XM_024451676.1 90.8% 14.4% (many diffs)
23 human 6929 TCF3 transcription factor 3 XM_024451677.1 90.8% 14.4% (many diffs)
24 human 6929 TCF3 transcription factor 3 XM_024451678.1 90.8% 14.4% (many diffs)
25 human 6929 TCF3 transcription factor 3 XM_024451669.1 89.5% 14.3% (many diffs)
26 human 6929 TCF3 transcription factor 3 XM_024451670.1 89.5% 14.3% (many diffs)
27 human 6929 TCF3 transcription factor 3 XM_024451671.1 89.5% 14.3% (many diffs)
28 human 6929 TCF3 transcription factor 3 XM_024451672.1 89.5% 14.3% (many diffs)
29 human 6929 TCF3 transcription factor 3 XM_024451673.1 89.5% 14.3% (many diffs)
30 human 6929 TCF3 transcription factor 3 XM_024451674.1 89.5% 14.3% (many diffs)
31 human 6929 TCF3 transcription factor 3 XM_017027180.2 83.3% 10.6% (many diffs)
32 human 6929 TCF3 transcription factor 3 XM_024451680.1 83.1% 15.2% (many diffs)
33 human 6929 TCF3 transcription factor 3 XR_002958351.1 43.3% (many diffs)
34 human 6929 TCF3 transcription factor 3 XR_001753747.1 43% (many diffs)
35 human 6929 TCF3 transcription factor 3 XR_001753743.2 42.7% (many diffs)
36 human 6929 TCF3 transcription factor 3 XR_002958347.1 41.9% (many diffs)
37 human 6929 TCF3 transcription factor 3 XR_002958348.1 41.9% (many diffs)
38 human 6929 TCF3 transcription factor 3 XR_002958350.1 40.2% (many diffs)
39 human 6929 TCF3 transcription factor 3 XR_001753745.1 39.7% (many diffs)
40 human 6929 TCF3 transcription factor 3 XR_002958349.1 39.3% (many diffs)
41 human 6929 TCF3 transcription factor 3 XR_002958346.1 39.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
423
ORF length:
354
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAACCAGCCG CAGAGGATGG CGCCTGTGGG CACAGACAAG GAGCTCAGTG
121ACCTCCTGGA CTTCAGCATG ATGTTCCCGC TGCCTGTCAC CAACGGGAAG GGCCGGCCCG
181CCTCCCTGGC CGGGGCGCAG TTCGGAGGTT CAGgtcttga ggaccggccc agctcaggct
241cctggggcag cggcgaccag agcagctcct cctttgaccc cagccggacc ttcagcgagg
301gcacccactt cactgagtcg cacagcagcc tctcttcatc cacattCATG TCGGAGGTTC
361AGGCAAGAGC GGTGAGCGGG GCGCCTATGC CTCCTTCGGG AGAGACGCAG GCGTGGGCGG
421CCTGACTCAG GCTGGCTTCC TGTCAGGCGA GCTGGCCCTC AACAGCCCCG GGCCCCTGTC
481CCCTTCGGGC ATGAAGGGGA CCTCCCAGTA CTACCCCTCC TACTCCGGCA GCTCCCGGCG
541GAGAGCGGCA GACGGCAGCC TAGACACGCA GCCCAAGAAG GTCCGGAAGG TCCCGCCGGG
601TCTTCCATCC TCGGTGTACC CACCCAGCTC AGGTGAGGAC TACGGCAGGG ATGCCACCGC
661CTACCCGTCC GCCAAGACCC CCAGCAGCAC CTATCCCGCC CCCTTCTACG TGGCAGATGG
721CAGCCTGCAC CCCTCAGCCG AGCTCTGGAG TCCCCCGGGC CAGGCGGGCT TCGGGCCCAT
781GCTGGGTGGG GGCTCATCCC CGCTGCCCCT CCCGCCCGGT AGCGGCCCGG TGGGCAGCAG
841TGGAAGCAGC AGCACGTTTG GTGGCCTGCA CCAGCACGAG CGTATGGGCT ACCAGCTGCA
901TGGAGCAGAG GTGAACGGTG GGCTCCCATC TGCATCCTCC TTCTCCTCAG CCCCCGGAGC
961CACGTACGGC GGCGTCTCCA GCCACACGCC GCCTGTCAGC GGGGCCGACA GCCTCCTGGG
1021CTCCCGAGGG ACCACAGCTG GCAGCTCCGG GGATGCCCTC GGCAAAGCAC TGGCCTCGAT
1081CTACTCCCCG GATCACTCAA GCAATAACTT CTCGTCCAGC CCTTCTACCC CCGTGGGCTC
1141CCCCCAGGGC CTGGCAGGAA CGTCACAGTG GCCTCGAGCA GGAGCCCCCG GTGCCTTATC
1201GCCCAGCTAC GACGGGGGTC TCCACGGCCT GCAGAGTAAG ATAGAAGACC ACCTGGACGA
1261GGCCATCCAC GTGCTCCGCA GCCACGCCGT GGGCACAGCC GGCGACATGC ACACGCTGCT
1321GCCTGGCCAC GGGGCGCTGG CCTCAGGTTT CACCGGCCCC ATGTCACTGG GCGGGCGGCA
1381CGCAGGCCTG GTTGGAGGCA GCCACCCCGA GGACGGCCTC GCAGGCAGCA CCAGCCTCAT
1441GCACAACCAC GCGGCCCTCC CCAGCCAGCC AGGCACCCTC CCTGACCTGT CTCGGCCTCC
1501CGACTCCTAC AGTGGGCTAG GGCGAGCAGG TGCCACGGCG GCCGCCAGCG AGATCAAGCG
1561GGAGGAGAAG GAGGACGAGG AGAACACGTC AGCGGCTGAC CACTCGGAGG AGGAGAAGAA
1621GGAGCTGAAG GCCCCCCGGG CCCGGACCAG GTgtacggac gaggtgctgt ccctggagga
1681gaaagacctg agggaccggg agaggcgcat ggccaataac gcgcgggagc gggtgcgcgt
1741gcgggatatt aacgaggcct tccgGGAGCT GGGGCGCATG TGCCAATCGC ACCTCAACGA
1801GCAGAAGCCC CAGACCAAAC TGCTCATCCT GCACCAGGCT GTCCTGGTCA TCCTgTAACT
1861GGAGCAGCAA GTGCGAGAGC GGAACCTGAA TCCCAAAGCA GCCTGTTTGA AACGGCGAGA
1921AGAGGAAAAG GTGTCAGGTG TGGTTGGAGA CCCCCAGATG GTGCTTTCAG CTCCCCACCC
1981AGGCCTGAGC GAAGCCCACA ACCCCGCCGG GCACATGTTG CCAACTTTCT TGTACAAAGT
2041TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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