Construct: ORF ccsbBroadEn_14866
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018955.1_s300c1, BRDN0000458251
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- TPR (7175)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7175 | TPR | translocated promoter regio... | NM_003292.3 | 96.2% | 10.4% | (many diffs) |
| 2 | mouse | 108989 | Tpr | translocated promoter regio... | NM_133780.3 | 82.4% | 9.3% | (many diffs) |
| 3 | mouse | 108989 | Tpr | translocated promoter regio... | XM_006529065.2 | 82.3% | 9.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 97
- ORF end:
- 868
- ORF length:
- 771
- Sequence:
-
1 GATGATTTAT TTTGACTGAT AGTGACCTGT TCGTTGCAAC AAATTGATGA GCAATGCTTT 61 TTTATAATGC CAACTTTGTA CAAAAAAGTT GGCACCATGG CGGCGGTGTT GCAGCAAGTC 121 CTGGAGCGCA CGGAGCTGAA CAAGCTGCCC AAGTCTGTCC AGAACAAACT TGAAAAGTTC 181 CTTGCTGATC AGCAATCCGA GATCGATGGC CTGAAGGGGC GGCATGAGAA ATTTAAGGTG 241 GAGAGCGAAC AACAGTATTT TGAAATAGAA AAGAGGTTGT CCCACAGTCA GGAGAGACTT 301 GTGAATGAAA CCCGAGAGTG TCAAAGCTTG CGGCTTGAGC TAGAGAAACT CAACAATCAA 361 CTGAAGGCAC TAACTGAGAA AAACAAAGAA CTTGAAATTG CTCAGGATCG CAATATTGCC 421 ATTCAGAGCC AATTTACAAG AACAAAGGAA GAATTAGAAG CTGAGAAAAG AGACTTAATT 481 AGAACCAATG AGAGACTATC TCAAGAACTT GAATACTTAA CAGAGGATGT TAAACGTCTG 541 AATGAAAAAC TTAAAGAAAG CAATACAACA AAGGGTGAAC TTCAGTTAAA ATTGGATGAA 601 CTTCAAGCTT CTGATGTTTC TGTTAAGTAT CGAGAAAAAC GCTTGGAGCA AGAAAAGGAA 661 TTGCTACATA GTCAGAATAC ATGGCTGAAT ACAGAGTTGA AAACCAAAAC TGATGAACTT 721 CTGGCTCTTG GAAGAGAAAA AGGGAATGAG ATTCTAGAGC TTAAATGTAA TCTTGAAAAT 781 AAAAAAGNAG AGGTTTCTAG ACTGGAAGNA CAAATGAATG GCTTTAAAAC ATCAAATGAA 841 CATCTCAAAA GCATGTGGAG GATCTGTTGA CCAAATTAAA AGAGGCCAAG GAACAACAGG 901 CCAGTATGGA AGAGAAATTC CACAATGAAT TAAATGCCCA CATAAAACTT TCTAATTTGT 961 ACAAGAGTGC CGCTGATGAC TCAGAAGCAA AGAGCAATGA ACTAACCCGG GCAGTAGAGG 1021 AACTACACAA ACTTTTGAAA GAAGCTGGTG AAGCCAACAA AGCAATACAA GATCATCTTC 1081 TAGAGGTGGA GCAATCCAAA GATCAAATGG AAAAAGAAAT GCTTGAGAAA ATAGGGAGAT 1141 TGGAGAAGGA ATTAGAGAAT GCAAATGACC TTCTTTCTGC CACAAAACGT AAAGGAGCCA 1201 TATTGTCTGA AGTATTTGTG GAGGCAGAAT CTGAAGGTAT TAGTTCAGAA GCAGGCCTAG 1261 AAATTGATAG CCAGCAGGAA GAAGAGCCGG TTCAAGCATC TGATGAGTCA GATCTCCCCT 1321 CCACCAGCCA GGATCCTCCT TCTAGCTCAT CTGTAGATAC TAGTAGTAGT CAACCAAAGC 1381 CTTTCAGACG AGTAAGACTT CAGACAACAT TGAGACAAGG TGTCCGTGGT CGTCAGTTTA 1441 ACAGACAGAG AGGTGTGAGC CATGCAATGG GAGGGAGAGG AGGAATAAAC AGAGGAAATA 1501 TTAATTTGCC AACTTTCTTG TACAAAGTTG GCATTATAAG AAAGCATTGC TTATCAATTT 1561 GTTGCAACGA ACAGGTCACT ATCAGTCAAA ATAAAATCAT TATTGCCATC CAGCTATGAG 1621 Gtgtacttga gagagataat cgaagaatgg aaatacaagt aaaagatctt tcacaacaga 1681 ttagagtgct tttgatggaa cttgaagaag caaggggtaa ccacgtaatt cgtgatgagg 1741 aagtaagctc tgctgatata agtagttcat ctgaggtaat atcacagcat ctagtatctt 1801 acagaaatat tgaagagctt caacaacaaa atcaacgtct cttagtggcc cttagagagc 1861 ttggggaaac cagagaaaga gaagaacaag aaacaacttc atccaaaatc actgagcttc 1921 agctcaaact tgagagtgcc cttactgaac tagaacaact ccgcaaatca cgacagcatc 1981 aaatgcagct tgttgattcc atagttcgtc agcgtgatat gtaccgtatt ttattgtcac 2041 aaacaacagg agttgccatt ccattacatg cttcaagctt agatgatgtt tctcttgcat 2101 caactccaaa acgtccaagt acatcacaga ctgtttccac tcctgctcca gtacctgtta 2161 ttgaatcaac agaggctata gaggctaagg ctgcccttaa acagttgcag gaaatttttg 2221 agaactacaa aaaagaaaaa gcagaaaatg aaaaaataca aaatgagcag cttgagaaac 2281 ttcaagaaca agttacagat ttgcgatcac aaaataccaa aatttctacc cagctagatt 2341 ttgcttctaa acgttatgaa atgctgcaag ataatgttga aggatatcgt cgagaaataa 2401 catcacttca tgagagaaat cagaaactca ctgccacaac tcaaaagcaa gaacagatta 2461 tcaatacgat gactcaagat ttgagaggag caaatgagaa gctagctgtc gcagaagtaa 2521 gagcagaaaa tttgaagaag gaaaaggaaa tgcttaaatt gtctgaagtt cgtctttctc 2581 agcaaagaga gtctttgtta gctgaacaaa gggggcaaaa cttactgcta actaatctgc 2641 aaacaattca gggaatactg gagcgatctg aaacagaaac caaacaaagg cttagtagcc 2701 agatagaaaa actggaacat gagatctctc atctaaagaa gaagttggaa aatgaggtgg 2761 aacaaaggca tacacttact agaaatctag atgttcaact tttagataca aagagacaac 2821 tggatacaga gacaaatctt catcttaaca caaaagaact attaaaaaat gctcaaaaag 2881 aaattgccac attgaaacag cacctcagta atatggaagt ccaagttgct tctcagtctt 2941 cacagagaac tggtaaaggt cagcctagca acaaagaaga tgtggatgat cttgtgagtc 3001 agctaagaca gacagaagag caggtgaatg acttaaagga gagactcaaa acaagtacga 3061 gcaatgtgga acaatatcaa gcaatggtta ctagtttaga agaatccctg aacaaggaaa 3121 aacaggtgac agaagaagtg cgtaagaata ttgaagttcg tttaaaagag tcagctgaat 3181 ttcagacaca gttggaaaag aagttgatgg aagtagagaa ggaaaaacaa gaacttcagg 3241 atgataaaag aagagccata gagagcatgg aacaacagtt atctgaattg aagaaaacac 3301 tttctagtgt tcagaatgaa gtacaagaag ctcttcagag agcaagcaca gctttaagta 3361 atgagcagca agccagacgt gactgtcagg aacaagctaa aatagctgtg gaagctcaga 3421 ataagtatga gagagaattg atgctgcatg ctgctgatgt tgaagctcta caagctgcga 3481 aggagcaggt ttcaaaaatg gcatcagtcc gtcagcattt ggaagaaaca acacagaaag 3541 cagaatcaca gttgttggag tgtaaagcat cttgggagga aagagagaga atgttaaagg 3601 atgaagtttc caaatgtgta tgtcgctgtg aagatctgga gaaacaaaac agattacttc 3661 atgatcagat cgaaaaatta agtgacaagg tcgttgcctc tgtgaaggaa ggtgtacaag 3721 gtccactgaa tgtatctctc agtgaagaag gaaaatctca agaacaaatt ttggaaattc 3781 tcagatttat acgacgagaa aaagaaattg ctgaaactag gtttgaggtg gctcaggttg 3841 agagtctgcg ttatcgacaa agggttgaac ttttagaaag agagctgcag gaactgcaag 3901 atagtctaaa tgctgaaagg gagaaagtcc aggtaactgc aaaaacaatg gctcagcatg 3961 aagaactgat gaagaaaact gaaacaatga atgtagttat ggagaccaat aaaatgctaa 4021 gagaagagaa ggagagacta gaacaggatc tacagcaaat gcaagcaaag gtgaggaaac 4081 tggagttaga tattttaccc ttacaagaag caaatgctga gctgagtgag aaaagcggta 4141 tgttgcaggc agagaagaag ctcttagaag aggatgtcaa acgttggaaa gcacgtaacc 4201 agcatctagt aagtcaacag aaagatccag atacagaaga atatcggaag ctcctttctg 4261 aaaaggaagt tcatactaag cgtattcaac aattgacaga agaaattggt agacttaaag 4321 ctgaaattgc aagatcaaat gcatctttga ctaacaacca gaacttaatt cagagtctga 4381 aggaagatct aaataaagta agaactgaaa aggaaaccat ccagaaggac ttagatgcca 4441 aaataattga tatccaagaa aaagtcaaaa ctattactca agttaagaaa attggacgta 4501 ggtacaagac tcaatatgaa gaacttaaag cacaacagga taaggttatg gagacatcgg 4561 ctcagtcctc tggagaccat caggagcagc atgtttcagt ccaggaaatg caggaactca 4621 aagaaacgct caaccaagct gaaacaaaat caaaatcact tgaaagtcaa gtagagaatc 4681 tgcagaagac attatctgaa aaagagacag aagcaagaaa tctccaggaa cagactgtgc 4741 aacttcagtc tgaactttca cgacttcgtc aggatcttca agatagaacc acacaggagg 4801 agcagctccg acaacagata actgaaaagg aagaaaaaac cagaaaggct attgtagcag 4861 caaagtcaaa aattgcacac ttagctggtg taaaagatca gctaactaaa gaaaatgagg 4921 agcttaaaca aaggaatgga gccttagatc agcagaaaga tgaattggat gttcgcatta 4981 ctgcgctaaa gtcccaatat gaaggtcgaa ttagtcgctt ggaaagagaa ctcagggagc 5041 atcaagagag acaccttgag cagagagatg agcctcaaga accttctaat aaggtccctg 5101 aacagcagag acagatcaca ttgaaaacaa ctccagcttc tggtgaaaga ggaattgcca 5161 gcacatcaga cccaccaaca gccaatatca agccaactcc tgttgtgtct actccaagta 5221 aagtgacagc tgcagctatg gctggaaata agtcaacacc cagggctagt atccgcccaa 5281 tggttacacc tgcaactgtt acaaatccca ctactacccc aacagctaca gtgatgccca 5341 ctacacaagt ggaatcacag gaagctatgc agtcagaagg gcctgtggaa catgttccag 5401 tttttggaag cacaagtgga tccgttcgtt ctactagtcc taatgtccag ccttctatct 5461 ctcaacctat tttaactgtt cagcaacaaa cacaggctac agcttttgtg caacccactc 5521 aacagagtca tcctcagatt gagcctgcca atcaagagtt atcttcaaac atagtagagg 5581 ttgttcagag ttcaccagtt gagcggcctt ctacttccac agcagtattt ggcacagttt 5641 cggctacccc cagttcttct ttgccaaagc gtacacgtga agaggaagag gatagcacca 5701 tagaagcatc agaccaagtc tctgatgata cagtggaaat gcctcttcca aagaagttga 5761 aaagtgtcac acctgtagga actgaggaag aagttatggc agaagaaagt actgatggag 5821 aggtagagac tcaggtatac aaccaggatt ctcaagattc cattggagaa ggagttaccc 5881 agggagatta tacacctatg gaagacagtg aagaaacctc tcagtctcta caaatagatc 5941 ttgggccact tcaatcagat cagcagacga caacttcatc ccaggatggt caaggcaaag 6001 gagatgatgt cattgtaatt gacagtgatg atgaagaaga ggatgatgat gaaaatgatg 6061 gagaacatga ggattatgaa gaggatgagg aagatgatga tgatgatgaa gatgacacag 6121 ggatgggaga tgagggtgaa gatagtaatg aaggaactgg tagtgccgat ggcaatgatg 6181 gttatgaagc tgatgatgct gagggtggtg atgggactga tccaggtaca gaaacagaag 6241 aaagtatggg tggaggtgaa ggtaatcaca gagctgctga ttctcaaaac agtggtgaag 6301 gaaatacagg tgctgcagaa tcttcttttt ctcaggaggt ttctagagaa caacagccat 6361 catcagcatc tgaaagacag gcccctcgag cacctcagtc accgagacgc ccaccacatc 6421 cacttccccc aagactgacc attcatgccc cacctcagga gttgggacca ccagttcaga 6481 gaattcagat gacccgaagg cagtctgtag gacgtggcct tcagttgact ccaggaatag 6541 gtggcatgca acagcatttt tttgatgatg aagacagaac agttccaagt actccaactc 6601 ttgtggtgcc acatcgtact gatggatttg ctgaagcaat tcattcgccg caggttgctg 6661 gtgtccctag attccggttt gggccacctg aagatatgcc acaaacaagt tctagtcact 6721 ctgatcttgg ccagcttgct tctcaaggag gtttaggaat gtatgaaaca cccctgttcc 6781 tagctcatga agaagagtca ggtggccgaa gtgttcccac tactccacta caagtagcag 6841 ccccagtgac tgtatttact gagagcacca cctctgatgc ttcggaacat gcctctcaat 6901 ctgttccaat ggtgactaca tccactggca ctttatctac aacaaatgaa acagcaacag 6961 gtgatgatgg agatgaagta tttgtggagg cagaatctga aggtattagt tcagaagcag 7021 gcctagaaat tgatagccag caggaagaag agccggttca agcatctgat gagtcagatc 7081 tcccctccac cagccaggat cctccttcta gctcatctgt agatactagt agtagtcaac 7141 caaagccttt cagacgagta agacttcaga caacattgag acaaggtgtc cgtggtcgtc 7201 agtttaacag acagagaggt gtgagccatg caatgggagg gagaggagga ataaacagag 7261 gaaatattaa tttgccaact ttcttgtaca aagttggcat tataagaaag cattgcttat 7321 caatttgttg caacgaac