Construct: ORF ccsbBroadEn_14888
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018846.1_s300c1, BRDN0000458142
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- BRD3 (8019)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8019 | BRD3 | bromodomain containing 3 | XM_017015165.2 | 75% | 33.1% | (many diffs) |
| 2 | human | 8019 | BRD3 | bromodomain containing 3 | NM_007371.4 | 74.9% | 33% | (many diffs) |
| 3 | human | 8019 | BRD3 | bromodomain containing 3 | XM_006717291.3 | 74.9% | 33% | (many diffs) |
| 4 | human | 8019 | BRD3 | bromodomain containing 3 | XM_011519052.2 | 74.9% | 33% | (many diffs) |
| 5 | human | 8019 | BRD3 | bromodomain containing 3 | XM_017015166.2 | 31.1% | 13.8% | (many diffs) |
| 6 | mouse | 67382 | Brd3 | bromodomain containing 3 | NM_001113573.1 | 66.5% | 31.6% | (many diffs) |
| 7 | mouse | 67382 | Brd3 | bromodomain containing 3 | NM_023336.4 | 66.5% | 31.6% | (many diffs) |
| 8 | mouse | 67382 | Brd3 | bromodomain containing 3 | NM_001113574.1 | 65% | 30.9% | (many diffs) |
| 9 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_006498249.3 | 65% | 30.9% | (many diffs) |
| 10 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_006498250.2 | 65% | 30.9% | (many diffs) |
| 11 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239155.2 | 65% | 30.9% | (many diffs) |
| 12 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239156.2 | 65% | 30.9% | (many diffs) |
| 13 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239157.2 | 65% | 30.9% | (many diffs) |
| 14 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239158.2 | 65% | 30.9% | (many diffs) |
| 15 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_017319221.1 | 28.1% | 13.5% | (many diffs) |
| 16 | mouse | 67382 | Brd3 | bromodomain containing 3 | XM_011239159.2 | 27.4% | 13.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 821
- ORF length:
- 723
- Sequence:
-
1 TATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG TCCACCGCCA CGACAGTCGC 121 CCCCGCGGGG ATCCCGGCGA CCCCGGGCCC TGTGAACCCA CCCCCCCCGG AGGTCTCCAA 181 CCCCAGCAAG CCCGGCCGCA AGACCAACCA GCTGCAGTAC ATGCAGAATG TGGTGGTGAA 241 GACGCTCTGG AAACACCAGT TCGCCTGGCC CTTCTACCAG CCCGTGGACG CAATCAAATT 301 GAACCTGCCG GATTATCATA AAATAATTAA AAACCCAATG GATATGGGGA CTATTAAGAA 361 GAGACTAGAA AATAATTATT ATTGGAGTGC AAGCGAATGT ATGCAGGACT TCAACACCAT 421 GTTTACAAAT TGTTACATTT ATAACAAGCC CACAGATGAC ATAGTGCTAA TGGCCCAAGC 481 TTTAGAGAAA ATTTTTCTAC AAAAAGTGGC CCAGATGCCC CAAGAGGAAG TTGAATTATT 541 ACCCCCTGCT CCAAAGGGCA AAGGTCGGAA GCCGGCTGCG GGAGCCCAGA GCGCAGGTAC 601 ACAGCAAGTG GCGGCCGTGT CCTCTGTCTC CCCAGCGACC CCCTTTCAGA GCGTGCCCCC 661 CACCGTCTCC CAGACGCCCG TCATCGCTGC CACCCCTGTA CCAACCATCA CTGCAAACGT 721 CACGTCGGTC CCAGTCCCCC CAGCTGCCGC CCCACCTCCT CCTGCCACAC CCATCGTCCC 781 CGTGGTCCCT CCTACGCCGC CTGTCGTCAA GAAAAAGGCG TGAAGCGGAA AGCAGACACA 841 ACCACTCCCA CGACGTCGGC CATcactgcc agccggagtg agtcgccccc gccgttgtca 901 gaccccaagc aggccaaagt ggtggcccgg cgggagagtg gtggccgccc catcaagcct 961 cccaagaagg acctggaGAA CGGCCGAGGT GCCCCAGCAC GCCAGGCAAG AAGGGCAAGC 1021 TGTCGGAGCA CCTGCGCTAC TGCGACAGCA TCCTCAGGGA GATGCTATCC AAGAAGCACG 1081 CGGCTACGCC TGGCCTTCTA CAAGCCAGTG GATGCCGAGG GCCTGGAGCT GCACGACTAC 1141 CACGACATCA TCAAGCACCC GATGGACCTC AGCACCGTGA AAAGGAAGAT GGATGGCCGA 1201 GAGTACCCAG ACGCACAGGG CTTTGCTGCT GATGTCCGGC TGATGTTCTC GAATTGCTAC 1261 AAATACAATC CCCCAGACCA CGAGGTTGTG GCCATGGCCC GGAAGCTCCA GGACGTGTTT 1321 GAGATGAGGT TTGCCAAGAT GCCAGATGAG CCCGTGGAGG CACCGGCGCT GCCTGCCCCT 1381 GCGGCCCCCA TGGTGAGCAA GGGCGCTGAG AGCAGCCGTA GCAGTGAGGA GAGCTCTTCG 1441 GACTCAGGCA GCTCGGACTC GGAGGAGGAG CGGGCCACCA GGCTGGCGGA GCTGCAGGAG 1501 CAGCTGAAGG CCGTGCACGA GCAGCTGGCC GCCCTGTCTC AGGCCCCAGT AAACAAACCA 1561 AAGAAGAAGA AGGAGAAGAA GGAGAAGGAG AAGAAGAAGA AGGACAAGGA GAAGGAGAAG 1621 GAGAAGCACA AAGTGAAGGC CGAGGAAGAG AAGAAGGCCA AGGTGGCTCC GCCTGCCAAG 1681 CAGGCTCAGC AGAAGAAGGC TCCTGCCAAG AAGGCCAACA GCACGACCAC GGCCGGCAGA 1741 GATCATTTCT TGACCTGTGG AGTTTTGCCA ACTTTCTTGT ACAAAGTTGG CATTATAAGA 1801 AAGCATTGCT TATCAATTTG TTGCAACGAA CAGGTCACTA TCAGTCAAAA TAAAATCATT 1861 ATTGCCATCC AGCGATCCAG GT