Construct: ORF ccsbBroadEn_14906
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018906.1_s300c1, BRDN0000458202
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CASK (8573)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8573 | CASK | calcium/calmodulin dependen... | NM_001126054.2 | 98.5% | 26.1% | (many diffs) |
| 2 | human | 8573 | CASK | calcium/calmodulin dependen... | NM_001126055.2 | 98.4% | 26.1% | (many diffs) |
| 3 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_011543995.2 | 97.7% | 25.9% | (many diffs) |
| 4 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_006724566.3 | 97% | 26.5% | (many diffs) |
| 5 | human | 8573 | CASK | calcium/calmodulin dependen... | NM_001367721.1 | 96.6% | 25.3% | (many diffs) |
| 6 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_011543996.2 | 96.4% | 26.2% | (many diffs) |
| 7 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_011543994.2 | 96.1% | 25.6% | (many diffs) |
| 8 | human | 8573 | CASK | calcium/calmodulin dependen... | NM_003688.3 | 96.1% | 25.5% | (many diffs) |
| 9 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_005272686.4 | 95.9% | 25.5% | (many diffs) |
| 10 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_011543993.2 | 95.3% | 25.2% | (many diffs) |
| 11 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_024452473.1 | 76.6% | 5.6% | (many diffs) |
| 12 | human | 8573 | CASK | calcium/calmodulin dependen... | XM_011543997.3 | 76% | 5.4% | (many diffs) |
| 13 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_006527561.3 | 93.7% | 26.1% | (many diffs) |
| 14 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_017318369.1 | 93.6% | 25.7% | (many diffs) |
| 15 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | NM_009806.3 | 93.5% | 26.1% | (many diffs) |
| 16 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_017318370.1 | 93.1% | 25.8% | (many diffs) |
| 17 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247441.2 | 92.9% | 25.9% | (many diffs) |
| 18 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_017318371.1 | 92.3% | 26% | (many diffs) |
| 19 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247440.2 | 92.2% | 25.8% | (many diffs) |
| 20 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247439.2 | 92.1% | 25.4% | (many diffs) |
| 21 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | NM_001284503.1 | 91.9% | 25.3% | (many diffs) |
| 22 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | NM_001284504.1 | 91.7% | 26.7% | (many diffs) |
| 23 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_017318368.1 | 91.6% | 25.5% | (many diffs) |
| 24 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_006527560.3 | 91.4% | 25.5% | (many diffs) |
| 25 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247438.2 | 91.3% | 25.1% | (many diffs) |
| 26 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | NM_001284505.1 | 91.2% | 25.5% | (many diffs) |
| 27 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_017318367.1 | 90.8% | 25.2% | (many diffs) |
| 28 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247436.2 | 89.6% | 24.6% | (many diffs) |
| 29 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_017318366.1 | 89% | 24.8% | (many diffs) |
| 30 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247437.1 | 88.4% | 24.9% | (many diffs) |
| 31 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247435.2 | 88.2% | 24.3% | (many diffs) |
| 32 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247433.1 | 88.1% | 24.3% | (many diffs) |
| 33 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247431.1 | 87.5% | 24% | (many diffs) |
| 34 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247432.1 | 87.1% | 24.1% | (many diffs) |
| 35 | mouse | 12361 | Cask | calcium/calmodulin-dependen... | XM_011247434.1 | 86.9% | 24.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 806
- ORF length:
- 708
- Sequence:
-
1 AACGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG GCCGACGACG ACGTGCTGTT 121 CGAGGATGTG TACGAGCTGT GCGAGGTGAT CGGAAAGGGT CCCTTCAGTG TTGTACGACG 181 ATGTATCAAC AGAGAAACTG GGCAACAATT TGCTGTAAAA ATTGTTGATG TAGCCAAGTT 241 CACATCAAGT CCAGGGTTAA GTACAGAAGA TCTAAAGCGG GAAGCCAGTA TCTGTCATAT 301 GCTGAAACAT CCACACATTG TAGAGTTATT GGAGACATAT AGCTCAGATG GAATGCTTTA 361 CATGGTTTTC GAATTTATGG ATGGAGCAGA TCTGTGTTTT GAAATCGTAA AGCGAGCTGA 421 CGCTGGTTTT GTGTACAGTG AAGCTGTAGC CAGCCATTAT ATGAGACAGA TACTGGAAGC 481 TCTACGCTAC TGCCATGATA ATAACATAAT TCACAGGGAT GTGAAGCCCC ACTGTGTTCT 541 CCTTGCCTCA AAAGAAAACT CGGCACCTGT TAAACTTGGA GGCTTTGGGG TAGCTATTCA 601 ATTAGGGGAG TCTGGACTTG TAGCTGGAGG ACGTGTTGGA ACACCTCATT TTATGGCACC 661 AGAAGTGGTC AAAAGAGAGC CTTACGGAAA GCCTGTAGAC GTCTGGGGGT GCGGTGTGAT 721 CCTTTTTATC CTGCTCAGTG GTTGTTTGCC TTTTTACGGA ACCAAGGAAA GATTGTTTGA 781 AGGCATTATT AAAGGAAAAT ATAGATGAAT CCAAGGCAGT GGAGCCATAT CTCTGAAAGT 841 GCCAAGACCT AGTACGTCGC ATGCTGATGC TGGATCCAGC TGAAAGGATC CACTGTTTTA 901 TGAAGCCACT GAATCACCCA TGgcttaagg agcgggatcg ttacgcctac aagattcatc 961 ttccagaaac agtagagcag ctgaggaaat tcaatgcaag gaggaaacta aagggtgcag 1021 tactagccgc tgtgtcaagt cacaaattca actcattcta tggggatccc cctgaagagt 1081 taccagattt ctccgaagac cctacctcct caggacttct agcagcagaa agagcagtct 1141 cacaggtgct ggacagcctg gaagagattc atgcgcttac agactgcagt gaaaaggacc 1201 tagattttct acacagtgtt ttccaggatc agcatcttca cacactacta gatctgtatg 1261 acaaaattaa cacaaagtct tcaccacaaa tcaggaatcc tccaagcgat gcagtacaga 1321 gagccaaaga ggtattggaa gaaatttcat gttaccctga gaataacgac gcaaaggaac 1381 taaagcgtat tttaacacaa cctcatttca tggccttact tcagactcac gacgtagtgg 1441 cacatgaagt ttacagtgat gaagcattga gggtcacacc tcctcccacc tctccctatt 1501 taaacggcga ttctccagaa agtgctaacg gagacatgga tatggagaat gtgaccagag 1561 ttcggctggt acagtttcaa aagaacacag atgaaccaat gggaatcact ttaaaaatga 1621 atgaactaaa tcattgtatt gttgcaagaa ttatgcatgg gggcatgatt cacaggcaag 1681 gtacacttca tgttggtgat gaaattcgag aaatcaatgg catcagtgtg gctaaccaaa 1741 cagtggaaca actgcaaaaa atgcttaggg aaatgcgggg gagtattacc ttcaagattg 1801 tgccaagtta ccgcactcag tcttcgtcct gtgaggactt gccatcaact acccaaccaa 1861 aaggacgaca gatctatgta agagcacaat ttgaatatga tccagccaag gatgacctca 1921 tcccctgtaa agaagctggc attcgattca gagttggtga catcatccag attattagta 1981 aggatgatca taattggtgg caggGTAACC TGAAAAACTC CCAAAAATTG GACTGCAGTC 2041 TCATTCCTTC TTCCTGACTT TCAGGAATTG CGAGTAGCTT GCATGNCCAT GGAGAGACCC 2101 AAACAGGAGC AGCAGCCCAG CTGTACTTGT TTGCAAGAAA AAAGAAGCAG TACAAAGATA 2161 AATATTTGGC AAAGCACAAT GCAGTGTTNG ATCAATTAGA TCTTGTCACA TATGAAGAAG 2221 TAGTAAAACT GCCAGCATTC AAGAGGAAAA CACTAGTCTT ATTAGGCGCA CATGGTGTTG 2281 GGAGAAGACA CATAAAAAAC ACTCTCATCA CAAAGCACCC AGACCGGTTT GCGTACCCTA 2341 TTCCACATAC AACCAGACCT CCAAAGAAAG ACGAAGAAAA TGGAAAGAAT TATTACTTTG 2401 TATCTCATGA CCAAATGATG CAAGACATCT CTAATAACGA GTACTTGGAG TACGGCAGCC 2461 ACGAGGATGC GATGTATGGG ACAAAACTGG AGACCATCCG GAAGATCCAC GAGCAGGGGC 2521 TGATTGCAAT ACTGGACGTG GAGCCTCAGG CACTGAAGGT CCTGAGAACT GCAGAGTTTG 2581 CTCCTTTTGT TGTTTTCATT GCTGCACCAA CTATTACTCC AGGTTTAAAT GAGGATGAAT 2641 CTCTTCAGCG TCTGCAGAAG GAGTCTGACA TCTTACAGAG AACATATGCA CACTACTTCG 2701 ATCTCACAAT TATCAACAAT GAAATTGATG AGACAATCAG ACATCTGGAG GAAGCTGTTG 2761 AGCTCGTGTG CACAGCCCCA CAGTGGGTCC CTGTCTCCTG GGTCTATTTG CCAACTTTCT 2821 TGTACAAAGT TGGCATTATA AGAAAGCATT GCTTATCAAT TTGTTGCAAC GAACAGGTCA 2881 CTATCAGTCA AAATAAAATC ATTATTGCCA TCCCAGCTTG ATTT