Construct: ORF ccsbBroadEn_14940
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018922.1_s300c1, BRDN0000458218
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- MAP4K4 (9448)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005372.1 | 99.9% | 19.6% | 685delG |
| 2 | human | 9448 | MAP4K4 | mitogen-activated protein k... | NM_004834.5 | 99.8% | 19.7% | 685delG;1715_1716insCAG |
| 3 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005373.1 | 99.7% | 19.7% | 685delG;1968_1969insGGCGAAGTG |
| 4 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005374.1 | 99.2% | 19.8% | 685delG;3093_3094ins24 |
| 5 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005375.1 | 99% | 19.8% | 685delG;1968_1969insGGCGAAGTG;3084_3085ins24 |
| 6 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005369.1 | 97.2% | 19.1% | 685delG;1482_1574del;1808_1809insCAG |
| 7 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_006712869.2 | 96.7% | 19.3% | 685delG;1482_1574del;3186_3187ins24 |
| 8 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005370.1 | 96.6% | 19.3% | (many diffs) |
| 9 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005371.1 | 96.4% | 19.3% | (many diffs) |
| 10 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264071.2 | 96.3% | 19.3% | (many diffs) |
| 11 | human | 9448 | MAP4K4 | mitogen-activated protein k... | NM_145687.4 | 94.8% | 18.9% | 685delG;1610_1771del;3255_3256ins24 |
| 12 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005368.1 | 94.8% | 18.9% | (many diffs) |
| 13 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264065.3 | 94.7% | 18.6% | 685delG;2273_2464del |
| 14 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264066.3 | 94.6% | 18.6% | 685delG;1715_1716insCAG;2270_2461del |
| 15 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264069.2 | 94.6% | 18.9% | (many diffs) |
| 16 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264068.3 | 94.5% | 18.7% | 685delG;1968_1969insGGCGAAGTG;2264_2455del |
| 17 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_006712868.2 | 94.1% | 18.7% | 685delG;2273_2464del;3285_3286ins24 |
| 18 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005366.1 | 93.7% | 18.4% | 685delG;1611_1841del |
| 19 | human | 9448 | MAP4K4 | mitogen-activated protein k... | NM_001242560.2 | 93.1% | 18.5% | 685delG;1611_1841del;3324_3325ins24 |
| 20 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005367.1 | 93% | 18.6% | (many diffs) |
| 21 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005365.1 | 92.5% | 18.4% | (many diffs) |
| 22 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264062.3 | 92.4% | 18.2% | 685delG;1482_1574del;2366_2557del |
| 23 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264063.3 | 92.3% | 18.2% | (many diffs) |
| 24 | human | 9448 | MAP4K4 | mitogen-activated protein k... | NM_001242559.2 | 92.2% | 18.5% | (many diffs) |
| 25 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264064.3 | 92.2% | 18.2% | (many diffs) |
| 26 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005363.1 | 91.8% | 18.3% | (many diffs) |
| 27 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005359.1 | 91.4% | 18% | 685delG;1482_1574del;1704_1934del |
| 28 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005364.1 | 91.4% | 18.3% | (many diffs) |
| 29 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005360.1 | 91.4% | 18% | (many diffs) |
| 30 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005361.1 | 90.8% | 18.1% | (many diffs) |
| 31 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005362.1 | 90.7% | 18.1% | (many diffs) |
| 32 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264059.3 | 90.7% | 17.8% | 685delG;1610_1771del;2435_2626del |
| 33 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005356.1 | 90.5% | 17.9% | (many diffs) |
| 34 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264060.3 | 90.4% | 17.9% | (many diffs) |
| 35 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005357.1 | 90.1% | 17.9% | (many diffs) |
| 36 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005358.1 | 90% | 18% | (many diffs) |
| 37 | human | 9448 | MAP4K4 | mitogen-activated protein k... | NM_145686.3 | 89.9% | 18% | (many diffs) |
| 38 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_006712865.2 | 89.1% | 17.5% | 685delG;1611_1841del;2504_2695del |
| 39 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264057.3 | 88.6% | 17.4% | (many diffs) |
| 40 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005354.1 | 88.5% | 17.6% | (many diffs) |
| 41 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264058.3 | 88.4% | 17.5% | (many diffs) |
| 42 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005355.1 | 88.3% | 17.7% | (many diffs) |
| 43 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005351.1 | 88.3% | 17.5% | (many diffs) |
| 44 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005352.1 | 88% | 17.5% | (many diffs) |
| 45 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005353.1 | 87.9% | 17.5% | (many diffs) |
| 46 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264050.3 | 87.1% | 17.1% | (many diffs) |
| 47 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264052.3 | 87% | 17.1% | (many diffs) |
| 48 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005350.1 | 86.5% | 17.2% | (many diffs) |
| 49 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_017005349.1 | 84.9% | 16.9% | (many diffs) |
| 50 | human | 9448 | MAP4K4 | mitogen-activated protein k... | XM_005264048.2 | 83.1% | 16.5% | (many diffs) |
| 51 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_006496046.1 | 89.2% | 19.8% | (many diffs) |
| 52 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_006496045.1 | 85.4% | 18.9% | (many diffs) |
| 53 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | NM_001252202.1 | 85.2% | 19% | (many diffs) |
| 54 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | NM_001252201.1 | 84.7% | 18.8% | (many diffs) |
| 55 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | NM_008696.2 | 83.8% | 18.6% | (many diffs) |
| 56 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_006496044.1 | 83% | 18.5% | (many diffs) |
| 57 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321018.1 | 82.6% | 18.3% | (many diffs) |
| 58 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321021.1 | 82.4% | 18.3% | (many diffs) |
| 59 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321016.1 | 81.1% | 18% | (many diffs) |
| 60 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_006496043.1 | 80.9% | 18% | (many diffs) |
| 61 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | NM_001252200.1 | 80.3% | 17.8% | (many diffs) |
| 62 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321013.1 | 79.7% | 17.6% | (many diffs) |
| 63 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321011.1 | 79.2% | 17.5% | (many diffs) |
| 64 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_011238530.1 | 78.4% | 17.4% | (many diffs) |
| 65 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321010.1 | 78.2% | 17.4% | (many diffs) |
| 66 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321004.1 | 77.9% | 17.3% | (many diffs) |
| 67 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_006496042.1 | 77.8% | 17.2% | (many diffs) |
| 68 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321002.1 | 76.5% | 16.9% | (many diffs) |
| 69 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017320998.1 | 74.9% | 16.6% | (many diffs) |
| 70 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_006496041.1 | 74.8% | 16.6% | (many diffs) |
| 71 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017320994.1 | 74.7% | 16.6% | (many diffs) |
| 72 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XM_017321001.1 | 74.6% | 16.6% | (many diffs) |
| 73 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XR_001784730.1 | 57.4% | (many diffs) | |
| 74 | mouse | 26921 | Map4k4 | mitogen-activated protein k... | XR_001784729.1 | 51.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 92
- ORF end:
- 806
- ORF length:
- 714
- Sequence:
-
1 ATTATTTTGA CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT 61 AATGCCAACT TTGTACAAAA AAGTTGGCAC CATGGCGAAC GACTCCCCTG CAAAAAGTCT 121 GGTGGACATC GACCTCTCCT CCCTGCGGGA TCCTGCTGGG ATTTTTGAGC TGGTGGAAGT 181 GGTTGGAAAT GGCACCTATG GACAAGTCTA TAAGGGTCGA CATGTTAAAA CGGGTCAGTT 241 GGCAGCCATC AAAGTTATGG ATGTCACTGA GGATGAAGAG GAAGAAATCA AACTGGAGAT 301 AAATATGCTA AAGAAATACT CTCATCACAG AAACATTGCA ACATATTATG GTGCTTTCAT 361 CAAAAAGAGC CCTCCAGGAC ATGATGACCA ACTCTGGCTT GTTATGGAGT TCTGTGGGGC 421 TGGGTCCATT ACAGACCTTG TGAAGAACAC CAAAGGGAAC ACACTCAAAG AAGACTGGAT 481 CGCTTACATC TCCAGAGAAA TCCTGAGGGG ACTGGCACAT CTTCACATTC ATCATGTGAT 541 TCACCGGGAT ATCAAGGGCC AGAATGTGTT GCTGACTGAG AATGCAGAGG TGAAACTTGT 601 TGACTTTGGT GTGAGTGCTC AGCTGGACAG GACTGTGGGG CGGAGAAATA CGTTCATAGG 661 CACTCCCTAC TGGATGGCTC CTGAGGTCAT CGCCTGTGAT GAGAACCCAG ATGCCACCTA 721 TGATTACAGA AGTGATCTTT GGTCTTGTGG CATTACAGCC ATTGAGATGG CAGAAGTGCT 781 CCCCCTCTCT GTGACATGCA TCCAATGAGA GCACTGTTTC TCATTCCCAG AAACCCTCCT 841 CCCCGGCTGA AGTCAAAAAA ATGGTCGAAG AAGTttttta gttttataga agggtgcctg 901 gtgaagaatt acatgcagcg gccctctaca gagcagcttt tgaaacatcc ttttataagg 961 gatcagccaa atgaaaggca agttagaatc cagcttaagg atcatataga tcgtaccagg 1021 aagaagagag gcgagaaaga tgaaactgag tatgagtaca gtgggagtga ggaagaagag 1081 gaggaagtgc ctgaacagga aggagagcca agttccattg tgaacgtgcc tggtgagtct 1141 actcttcgcc gagatttcct gagactgcag caggagaaca aggaacgttc cgaggctctt 1201 cggagacaac agttactaca ggagcaacag ctccgggagc aggaagaata taaaaggcaa 1261 ctgctggcag agagacagaa gcggattgag cagcagaaag aacagaggcg acggctagaa 1321 gagcaacaaa ggagagagcg ggaagctaga aggcagcagg aacgtgaaca gcgaaggaga 1381 gaacaagaag aaaagaggcg tctagaggag ttggagagaa ggcgcaaaga agaagaggag 1441 aggagacggg cagaagaaga aaagaggaga gttgaaagag aacaggagta tatcaggcga 1501 cagctagaag aggagcagcg gcacttggaa gtccttcagc agcagctgct ccaggagcag 1561 gccatgttac tgcatgacca taggaggccg cacccgcagc actcgcagca gccgccacca 1621 ccgcagcagg aaaggagcaa gccaagcttc catgctcccg agcccaaagc ccactacgag 1681 cctgctgacc gagcgcgaga ggttcctgtg agaacaacat ctcgctcccc tgttctgtcc 1741 cgtcgagatt ccccactgca gggcagtggg cagcagaata gccaggcagg acagagaaac 1801 tccaccagca gtattgagcc caggcttctg tgggagagag tggagaagct ggtgcccaga 1861 cctggcagtg gcagctcctc agggtccagc aactcaggat cccagcccgg gtctcaccct 1921 gggtctcaga gtggctccgg ggaacgcttc agagtgagat catcatccaa gtctgaaggc 1981 tctccatctc agcgcctgga aaatgcagtg aaaaaacctg aagataaaaa ggaagttttc 2041 agacccctca agcctgctgg cgaagtggat ctgaccgcac tggccaaaga gcttcgagca 2101 gtggaagatg tacggccacc tcacaaagta acggactact cctcatccag tgaggagtcg 2161 gggacgacgg atgaggagga cgacgatgtg gagcaggaag gggctgacga gtccacctca 2221 ggaccagagg acaccagagc agcgtcatct ctgaatttga gcaatggtga aacggaatct 2281 gtgaaaacca tgattgtcca tgatgatgta gaaagtgagc cggccatgac cccatccaag 2341 gagggcactc taatcgtccg ccagactcag tccgctagta gcacactcca gaaacacaaa 2401 tcttcctcct cctttacacc ttttatagac cccagattac tacagatttc tccatctagc 2461 ggaacaacag tgacatctgt ggtgggattt tcctgtgatg ggatgagacc agaagccata 2521 aggcaagatc ctacccggaa aggctcagtg gtcaatgtga atcctaccaa cactaggcca 2581 cagagtgaca ccccggagat tcgtaaatac aagaagaggt ttaactctga gattctgtgt 2641 gctgccttat ggggagtgaa tttgctagtg ggtacagaga gtggcctgat gctgctggac 2701 agaagtggcc aagggaaggt ctatcctctt atcaaccgaa gacgatttca acaaatggac 2761 gtacttgagg gcttgaatgt cttggtgaca atatctggca aaaaggataa gttacgtgtc 2821 tactatttgt cctggttaag aaataaaata cttcacaatg atccagaagt tgagaagaag 2881 cagggatgga caaccgtagg ggatttggaa ggatgtgtac attataaagt tgtaaaatat 2941 gaaagaatca aatttctggt gattgctttg aagagttctg tggaagtcta tgcgtgggca 3001 ccaaagccat atcacaaatt tatggccttt aagtcatttg gagaattggt acataagcca 3061 ttactggtgg atctcactgt tgaggaaggc cagaggttga aagtgatcta tggatcctgt 3121 gctggattcc atgctgttga tgtggattca ggatcagtct atgacattta tctaccaaca 3181 catgtaagaa agaacccaca ctctatgatc cagtgtagca tcaaacccca tgcaatcatc 3241 atcctcccca atacagatgg aatggagctt ctggtgtgct atgaagatga gggggtttat 3301 gtaaacacat atggaaggat caccaaggat gtagttctac agtggggaga gatgcctaca 3361 tcagtagcat atattcgatc caatcagaca atgggctggg gagagaaggc catagagatc 3421 cgatctgtgg aaactggtca cttggatggt gtgttcatgc acaaaagggc tcaaagacta 3481 aaattcttgt gtgaacgcaa tgacaaggtg ttctttgcct ctgttcggtc tggtggcagc 3541 agtcaggttt atttcatgac cttaggcagg acttctcttc tgagctggtt gccaactttc 3601 ttgtacaaag ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac