Construct: ORF ccsbBroadEn_14951
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018884.1_s300c1, BRDN0000458180
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- GNE (10020)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | NM_005476.7 | 99.4% | 33.7% | (many diffs) |
| 2 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | XM_017014167.1 | 99.4% | 33.7% | (many diffs) |
| 3 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | NM_001128227.3 | 95.3% | 32.4% | (many diffs) |
| 4 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | NM_001190388.1 | 93.4% | 27.1% | (many diffs) |
| 5 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | XM_017014168.1 | 92.4% | 31.4% | (many diffs) |
| 6 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | NM_001190383.3 | 89.6% | 37.6% | 733delA;1374A>C;1409_1410ins222 |
| 7 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | XM_005251334.4 | 88.6% | 30% | (many diffs) |
| 8 | human | 10020 | GNE | glucosamine (UDP-N-acetyl)-... | NM_001190384.3 | 84.2% | 22.7% | (many diffs) |
| 9 | mouse | 50798 | Gne | glucosamine (UDP-N-acetyl)-... | NM_001190414.1 | 87.1% | 33.5% | (many diffs) |
| 10 | mouse | 50798 | Gne | glucosamine (UDP-N-acetyl)-... | XM_006538073.3 | 84.2% | 32.3% | (many diffs) |
| 11 | mouse | 50798 | Gne | glucosamine (UDP-N-acetyl)-... | NM_015828.3 | 83.5% | 32.1% | (many diffs) |
| 12 | mouse | 50798 | Gne | glucosamine (UDP-N-acetyl)-... | XM_006538074.3 | 80.5% | 25.4% | (many diffs) |
| 13 | mouse | 50798 | Gne | glucosamine (UDP-N-acetyl)-... | XM_017320310.1 | 62.7% | 5.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 92
- ORF end:
- 833
- ORF length:
- 741
- Sequence:
-
1 TTTATTTTGA CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT 61 AATGCCAACT TTGTACAAAA AAGTTGGCAC CATGGAGAAG AATGGAAATA ACCGAAAGCT 121 GCGGGTTTGT GTTGCTACTT GTAACCGTGC AGATTATTCT AAACTTGCCC CGATCATGTT 181 TGGCATTAAA ACCGAACCTG AGTTCTTTGA ACTTGATGTT GTGGTACTTG GCTCTCACCT 241 GATAGATGAC TATGGAAATA CATATCGAAT GATTGAACAA GATGACTTTG ACATTAACAC 301 CAGGCTACAC ACAATTGTGA GGGGAGAAGA TGAGGCAGCC ATGGTGGAGT CAGTAGGCCT 361 GGCCCTAGTG AAGCTGCCAG ATGTCCTTAA TCGCCTGAAG CCTGATATCA TGATTGTTCA 421 TGGAGACAGG TTTGATGCCC TGGCTCTGGC CACATCTGCT GCCTTGATGA ACATCCGAAT 481 CCTTCACATT GAAGGTGGGG AAGTCAGTGG GACCATTGAT GACTCTATCA GACATGCCAT 541 AACAAAACTG GCTCATTATC ATGTGTGCTG CACCCGCAGT GCAGAGCAGC ACCTGATATC 601 CATGTGTGAG GACCATGATC GCATCCTTTT GGCAGGCTGC CCTTCCTATG ACAAACTTCT 661 CTCAGCCAAG AACAAAGACT ACATGAGCAT CATTCGCATG TGGCTAGGTG ATGATGTAAA 721 ATCTAAAGAT TACATTGTTG CACTACAGCA CCCTGTGACC ACTGACATTA AGCATTCCAT 781 AAAAATGTTT GAATTAACAT TGGATGCACT TATCTCATTT AACAGCGGAC CCTAGTCCTG 841 TTTCCAAATA TTGACGCAGG GAGCAAAGAG ATGGTTCGAG TGATGCGGaa gaagggcatt 901 gagcatcatc ccaactttcg tgcagttaaa cacgtcccat ttgaccagtt tatacagttg 961 gttgcccatg ctggctgtat gattgggaac agcagctgtg gggttcgaga agttggagct 1021 tttggaacac ctgtgatcaa cctgggaaca cgtcagattg gaagagaaac aggggagaat 1081 gttcttcatg tccgggatgc tgacacccaa gacaaaatat tgcaagcact gcaccttcag 1141 tttggtaaac agtacccttg ttcaaagata tatggggatg gaaatgctgt tccaaggatt 1201 ttgaagtttc tcaaatctat cgatcttcaa gagccactgc aaaagaaatt ctgctttcct 1261 cctgtgaagg agaatatctc tcaagatatt gaccatattc ttgaaactct aagtgccttg 1321 gccgttgatc ttggcgggac gaacctccga gttgcaatag tcagcatgaa gggtgaaata 1381 gttaagaagt atactcagtt caatcctaaa acctatgaag agaggattaa tttaatccta 1441 cagatgtgtg tggaagctgc agcCGAAGCT GTAAAACTGA ACTGCAGAAT TTTGGGAGTA 1501 GGCATTTCCA CAGGTGNCCG TGTAATCTTC GGAAAAGGAA ATGTGCTGCA TTCAACCCAA 1561 CTGATCCAAG AGTGGAACTC TGTGACNTTT AGGACCCCCC TTTCTGACAC TTTGCATCTC 1621 CCTGTGTGGG TAGACAATGG TGGCAACTGT GCTGCCCTGG CGGAAAGGAA ATTTGGCCAA 1681 GGAAAGGGAC TGGAAAACTT TGTTACACTT ATCACAGGCA CAGGAATCGG TGGTGGAATT 1741 ATCCATCAGC ATGAATTGAT CCACGGAAGC TCCTTCTGTG CTGCAGAACT GGGCCACCTT 1801 GTTGTGTCTC TGGATGGGCC TGATTGTTCC TGTGGAAGCC ATGGGTGCAT TGAAGCATAC 1861 GCCTCTGGAA TGGCCTTGCA GAGGGAGGCA AAAAAGCTCC ATGATGAGGA CCTGCTCTTG 1921 GTGGAAGGGA TGTCAGTGCC AAAAGATGAG GCTGTGGGTG CGCTCCATCT CATCCAAGCT 1981 GCGAAACTTG GCAATGCGAA GGCCCAGAGC ATCCTAAGAA CAGCTGGAAC AGCTTTGGGT 2041 CTTGGGGTTG TGAACATCCT CCATACCATG AATCCCTCCC TTGTGATCCT CTCCGGAGTC 2101 CTGGCCAGTC ACTATATCCA CATTGTCAAA GACGTCATTC GCCAGCAGGC CTTGTCCTCC 2161 GTGCAGGACG TGGATGTGGT GGTTTCGGAT TTGGTTGACC CCGCCCTGCT GGGTGCTGCC 2221 AGCATGGTTC TGGACTACAC AACACGCAGG ATCTACTTGC CAACTTTCTT GTACAAAGTT 2281 GGCATTATAA GAAAGCATTG CTTATCAATT TGTTGCAACG AACAGGTCAC TATCAGTCAA 2341 AATAAAATCA TTATTGCCAT CCCAGCCTGA TT