Construct: ORF ccsbBroadEn_14954
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018814.1_s300c1, BRDN0000458110
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SGK2 (10110)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10110 | SGK2 | serum/glucocorticoid regula... | NM_001199264.1 | 99.5% | 35.2% | (many diffs) |
| 2 | human | 10110 | SGK2 | serum/glucocorticoid regula... | NM_170693.3 | 99.5% | 35.2% | (many diffs) |
| 3 | human | 10110 | SGK2 | serum/glucocorticoid regula... | NM_016276.3 | 85.6% | 30.3% | (many diffs) |
| 4 | mouse | 27219 | Sgk2 | serum/glucocorticoid regula... | NM_013731.3 | 88.6% | 33.3% | (many diffs) |
| 5 | mouse | 27219 | Sgk2 | serum/glucocorticoid regula... | XM_006499658.3 | 88.6% | 33.3% | (many diffs) |
| 6 | mouse | 27219 | Sgk2 | serum/glucocorticoid regula... | NM_001291152.1 | 88.4% | 33% | (many diffs) |
| 7 | mouse | 27219 | Sgk2 | serum/glucocorticoid regula... | NM_001291154.1 | 81.9% | 37.1% | (many diffs) |
| 8 | mouse | 27219 | Sgk2 | serum/glucocorticoid regula... | XM_011239580.2 | 81.9% | 37.1% | (many diffs) |
| 9 | mouse | 27219 | Sgk2 | serum/glucocorticoid regula... | XM_006499660.3 | 71.5% | 40.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 578
- ORF length:
- 480
- Sequence:
-
1 AAGGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG AACTCTAGCC CAGCTGGGAC 121 CCCAAGTCCA CAGCCCTCCA GGGCCAATGG GAACATCAAC CTGGGGCCTT CAGCCAACCC 181 AAATGCCCAG CCCACGGACT TCGACTTCCT CAAAGTCATC GGCAAAGGGA ACTACGGGAA 241 GGTCCTACTG GCCAAGCGCA AGTCTGATGG GGCGTTCTAT GCAGTGAAGG TACTACAGAA 301 AAAGTCCATC TTAAAGAAGA AAGAGCAGAG CCACATCATG GCAGAGCGCA GTGTGCTTCT 361 GAAGAACGTG CGGCACCCCT TCCTCGTGGG CCTGCGCTAC TCCTTCCAGA CACCTGAGAA 421 GCTCTACTTC GTGCTCGACT ATGTCAACGG NGGAGGAGCT CTTCTTCCAC CTGCAGCGGG 481 AGCGCCGGTT CCTGGAGCCC CGGGCCCAGG TTCTACGCTG CTGAGGTGGC CAGCGCCATT 541 GGCTACCTGC ACTCCCTCAA CATCATTTAC AGGGATCTGA AACCAGAGAA CATTCTCTTG 601 GACTGCCAGG GACACGTGGT GCTGACGGAT TTTGGCCTCT GCAAGGAAGG TGTAGAGCCT 661 GAAGACACCA CATCCACATT CTGTGGTACC CCTGAGTACT TGGCACCTGA AGTGCTTCGG 721 AAAGAGCCTT ATGATCGAGC AGTGGACTGG TGGTGCTTGG GGGCAGTCCT CTACGAGATG 781 CTCCATGGGC CTGCCGCCCT TCTACAGCCA AGATGTATCC CAGATGTATG AGAACATTCT 841 GCACCAGCCG CTACAGATCC CCGGAAGGCC GGACAGTGGC CGCCTGTGAC CTCCTGCAAA 901 GCCTTCTCCA CAAGGACCAG AGGCAGCGGC TGGGCTCCAA AGCAGACTTT CTTGAGATTA 961 AGAACCATGT ATTCTTCAGC CCCATAAACT GGGATGACCT GTACCACAAG AGGCTAACTC 1021 CACCCTTCAA CCCAAATGTG ACAGGACCTG CTGACTTGAA GCATTTTGAC CCAGAGTTCA 1081 CCCAGGAAGC TGTGTCCAAG TCCATTGGCT GTACCCCTGA CACTGTGGCC AGCAGCTCTG 1141 GGGCCTCAAG TGCATTCCTG GGATTTTCTT ATGCGCCAGA GGATGATGAC ATCTTGGATT 1201 GCTTGCCAAC TTTCTTGTAC AAAGTTGGCA TTATAAGAAA GCATTGCTTA TCAATTTGTT 1261 GCAACGAACA GGTCACTATC AGTCAAAATA AAATCATTAT TGCCATCCAG CTGATTCCCG 1321 A