Construct: ORF ccsbBroadEn_14967
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018800.1_s300c1, BRDN0000458096
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CIB1 (10519)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10519 | CIB1 | calcium and integrin binding 1 | NM_006384.4 | 100% | 100% | |
| 2 | human | 10519 | CIB1 | calcium and integrin binding 1 | NM_001277764.1 | 82.6% | 82.6% | 87_206del |
| 3 | human | 10519 | CIB1 | calcium and integrin binding 1 | XM_006720375.2 | 71.8% | 70.4% | (many diffs) |
| 4 | human | 10519 | CIB1 | calcium and integrin binding 1 | NR_102428.1 | 63% | (many diffs) | |
| 5 | human | 10519 | CIB1 | calcium and integrin binding 1 | NR_102427.1 | 55.2% | (many diffs) | |
| 6 | mouse | 23991 | Cib1 | calcium and integrin bindin... | NM_011870.5 | 88.9% | 93.7% | (many diffs) |
| 7 | mouse | 23991 | Cib1 | calcium and integrin bindin... | NM_001291275.1 | 86.6% | 91% | (many diffs) |
| 8 | mouse | 23991 | Cib1 | calcium and integrin bindin... | NM_001291276.1 | 67.7% | 72.2% | (many diffs) |
| 9 | mouse | 23991 | Cib1 | calcium and integrin bindin... | XM_011250861.2 | 54.9% | 58.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 190
- ORF end:
- 763
- ORF length:
- 573
- Sequence:
-
1 TNNNGNNNTN NTNNNNNNNN NTNNTNNNNN TGTCAGGAAC TTCCCAGTCC CGCGTGTAAC 61 TCTACTGTCC AGTATTAAGC CGGACCCCAA ATAATGATTT TATTTTGACT GATAGTGACC 121 TGTTCGTTGC AACAAATTGA TGAGCAATGC TTTTTTATAA TGCCAACTTT GTACAAAAAA 181 GTTGGCACCA TGGGGGGCTC GGGCAGTCGC CTGTCCAAGG AGCTGCTGGC CGAGTACCAG 241 GACTTGACGT TCCTGACGAA GCAGGAGATC CTCCTAGCCC ACAGGCGGTT TTGTGAGCTG 301 CTTCCCCAGG AGCAGCGGAG CGTGGAGTCG TCACTTCGGG CACAAGTGCC CTTCGAGCAG 361 ATTCTCAGCC TTCCAGAGCT CAAGGCCAAC CCCTTCAAGG AGCGAATCTG CAGGGTCTTC 421 TCCACATCCC CAGCCAAAGA CAGCCTTAGC TTTGAGGACT TCCTGGATCT CCTCAGTGTG 481 TTCAGTGACA CAGCCACGCC AGACATCAAG TCCCATTATG CCTTCCGCAT CTTTGACTTT 541 GATGATGACG GAACCTTGAA CAGAGAAGAC CTGAGCCGGC TGGTGAACTG CCTCACGGGA 601 GAGGGCGAGG ACACACGGCT TAGTGCGTCT GAGATGAAGC AGCTCATCGA CAACATCCTG 661 GAGGAGTCTG ACATTGACAG GGATGGAACC ATCAACCTCT CTGAGTTCCA GCACGTCATC 721 TCCCGTTCTC CAGACTTTGC CAGCTCCTTT AAGATTGTCC TGTTGCCAAC TTTCTTGTAC 781 AAAGTTGGCA TTATAAGAAA GCATTGCTTA TCAATTTGTT GCAACGAACA GGTCACTATC 841 AGTCAAAATA AAATCATTAT TNNCNNNCNN NNNNNNANNC CCTATAGTGA GTCGTATTAC 901 ATGGGTCATA GCTGATTCCT GGCAGCTCTG GCCCGTGTCT CACTCCTCTG AGAGGTGTAT 961 CCACATCCGT CCTGGGAGCC CAGCCTGCTT GGATCCTCAG AGATGTACGG ATCGCACCCT 1021 GGGT