Construct: ORF ccsbBroadEn_15037
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018875.1_s300c1, BRDN0000458171
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SRPK3 (26576)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26576 | SRPK3 | SRSF protein kinase 3 | NM_001170760.2 | 98.1% | 41.1% | (many diffs) |
| 2 | human | 26576 | SRPK3 | SRSF protein kinase 3 | NM_014370.4 | 97.9% | 41% | (many diffs) |
| 3 | human | 26576 | SRPK3 | SRSF protein kinase 3 | NM_001170761.1 | 92.5% | 43.7% | (many diffs) |
| 4 | mouse | 56504 | Srpk3 | serine/arginine-rich protei... | NM_019684.2 | 84.3% | 38.5% | (many diffs) |
| 5 | mouse | 56504 | Srpk3 | serine/arginine-rich protei... | XM_006528172.3 | 80.7% | 36.8% | (many diffs) |
| 6 | mouse | 56504 | Srpk3 | serine/arginine-rich protei... | XM_017318579.1 | 37.4% | 75.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 839
- ORF length:
- 741
- Sequence:
-
1 AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG AGCGCCAGCA CGGGCGGTGG 121 TGGGGACAGC GGCGGCAGCG GCGGCAGTAG CAGCAGCTCA CAGGCCTCCT GCGGGCCCGA 181 GTCCTCGGGC TCCGAACTAG CCCTGGCCAC ACCGGTGCCT CAGATGCTGC AGGGCCTTCT 241 GGGCTCCGAC GACGAGGAAC AGGAAGACCC CAAAGACTAC TGCAAGGGCG GCTACCACCC 301 TGTGAAGATC GGCGACGTGT TCAATGGGCG GTACCACGTG GTGCGCAAAC TGGGCTGGGG 361 CCACTTCTCC ACCGTCTGGC TCTGCTGGGA CATCCAGCGC AAGCGCTTTG TGGCCCTCAA 421 AGTGGTGAAG AGTGCGGGGC ATTACACGGA GACAGCTGTG GATGAGATCA AGCTCCTGAA 481 ATGTGTCCGG GACAGCGACC CCAGTGACCC CAAAAGAGAG ACCATTGTCC AGCTCATTGA 541 TGACTTCAGG ATCTCAGGAG TCAATGGAGT CCATGTGTGC ATGGTGCTGG AGGTGCTGGG 601 CCACCAGCTC CTCAAATGGA TCATCAAGTC CAACTACCAG GGCCTGCCCG TGCCCTGCGT 661 GAAGAGCATC GTGAGGCAGG TGCTGCACGG CCTGGACTAC CTCCACACCA AGTGCAAGAT 721 CATCCACACG GACATCAAGC CCGAGAACAT CTTGCTGTGT GTGGGGGACG CTTACATCAG 781 CGCCTGGCTG CCGAGGCCAC GGAGTGCAAC AGGCAGGGGC GCCGCCCCCT CCCGCTCATA 841 GTCAGCACTG CCCCCCAGAG TCTTGACCGG TAAGCTGTCC AAAAACAAGA GGAAGAAGAT 901 GAGGCGCAAC GGGAAACAGC Agaagcggct gctggaggag cggctgcggg acctgcagag 961 gctggaggcc aTGGAAGGTG TCCCACCCCA GGGCGAAGGA TTCTGGCTTG GGAATTGGAC 1021 GGGGGCAGGC CGGCTCCACA TCTTCCTTCA GGCTGTCACC CCCGGGGGCG CCAGAGCCAG 1081 TCCCTCCCCA AGCCTCTTCC TCCCCCNGCC CCAGGGGGCG GCCGTAGCCT CAGCGCGGGC 1141 TCACAGACCT CAGGCTTCTC CGGCTCCCTC TTCTCTCCTG CCTCCTGCTC CATCCTCTCC 1201 GGCTCGTCCA ATCAGCGAGA GACCGGGGGC CTCCTGTCGC CTAGCACACC ATTCGGTGCC 1261 TCGAACCTCC TGGTGAACCC CCTGGAGCCC CAAAATGCAG ATAAGATCAA GATCAAGATC 1321 GCAGACCTGG GCAACGCCTG CTGGGTGCAC AAGCACTTCA CGGAAGACAT CCAGACTCGG 1381 CAGTACCGGG CCGTCGAGGT GCTGATCGGC GCCGAATACG GCCCCCCGGC AGACATCTGG 1441 AGCACAGCCT GCATGGCCTT CGAGCTGGCC ACTGGTGACT ACCTGTTCGA GCCGCATTCT 1501 GGAGAAGACT ACAGTCGTGA TGAGGACCAC ATCGCTCACA TAGTGGAGCT TCTGGGGGAC 1561 ATCCCCCCAG CCTTCGCCCT CTCAGGCCGC TATTCCCGGG AGTTCTTCAA CCGGAGAGGA 1621 GAGCTGCGGC ACATCCACAA TCTCAAGCAC TGGGGCCTGT ACGAGGTACT CATGGAAAAG 1681 TACGAGTGGC CCCTAGAGCA GGCCACACAG TTCAGCGCCT TTCTGCTGCC CATGATGGAG 1741 TACATCCCCG AAAAGCGGGC CAGTGCCGCT GACTGCCTCC AGCACCCCTG GCTCAACCCC 1801 TTGCCAACTT TCTTGTACAA AGTTGGCATT ATAAGAAAGC ATTGCTTATC AATTTGTTGC 1861 AACGAACAGG TCACTATCAG TCAAAATAAA ATCATTATTG CCATCCAGGC TGAATCCCCC