Construct: ORF ccsbBroadEn_15070

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016861.1_s300c1, BRDN0000397023
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC25A39 (51629)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51629 SLC25A39 solute carrier family 25 me... NM_016016.3 99.3% 99.1% 19_20delGCinsCT;23_24delGCinsAG;331_333delGGCinsCTG
2 human 51629 SLC25A39 solute carrier family 25 me... NM_001321241.1 97.6% 97.4% (many diffs)
3 human 51629 SLC25A39 solute carrier family 25 me... NM_001143780.3 97.1% 96.6% (many diffs)
4 human 51629 SLC25A39 solute carrier family 25 me... XM_011524880.3 95.5% 95% (many diffs)
5 human 51629 SLC25A39 solute carrier family 25 me... NM_001321240.1 95% 94.5% (many diffs)
6 human 51629 SLC25A39 solute carrier family 25 me... XM_011524882.3 93.4% 92.9% (many diffs)
7 human 51629 SLC25A39 solute carrier family 25 me... XM_024450797.1 78.5% 78.3% (many diffs)
8 human 51629 SLC25A39 solute carrier family 25 me... XM_024450796.1 77.4% 77.3% (many diffs)
9 human 51629 SLC25A39 solute carrier family 25 me... NM_001366726.1 73.5% 63.2% 0_1ins211;89_90ins68
10 human 51629 SLC25A39 solute carrier family 25 me... XM_011524883.3 72.2% 62.2% 0_1ins211;89_90ins68;387_404del
11 human 51629 SLC25A39 solute carrier family 25 me... XM_011524884.1 72.2% 62.2% 0_1ins211;89_90ins68;387_404del
12 human 51629 SLC25A39 solute carrier family 25 me... NR_159402.1 60.1% (many diffs)
13 human 51629 SLC25A39 solute carrier family 25 me... NR_159401.1 59.4% (many diffs)
14 human 51629 SLC25A39 solute carrier family 25 me... NR_159403.1 58.6% (many diffs)
15 human 51629 SLC25A39 solute carrier family 25 me... NR_159404.1 56.9% (many diffs)
16 human 51629 SLC25A39 solute carrier family 25 me... XR_002958020.1 56.1% (many diffs)
17 human 51629 SLC25A39 solute carrier family 25 me... NR_159405.1 53.2% (many diffs)
18 human 51629 SLC25A39 solute carrier family 25 me... XR_002958018.1 50.3% (many diffs)
19 human 51629 SLC25A39 solute carrier family 25 me... XR_002958019.1 34.2% (many diffs)
20 mouse 68066 Slc25a39 solute carrier family 25, m... NM_026542.3 83.8% 86.3% (many diffs)
21 mouse 68066 Slc25a39 solute carrier family 25, m... XM_006534034.1 83.8% 86.3% (many diffs)
22 mouse 68066 Slc25a39 solute carrier family 25, m... XM_006534035.1 83.8% 86.3% (many diffs)
23 mouse 68066 Slc25a39 solute carrier family 25, m... XM_006534036.3 77.7% 79.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1119
ORF length:
1053
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGACCAGGAC CCTCTGGAGa tcagccccct ccagcaaatg gtggcctcag
121gcaccggggc tgtggttacc tctctcttca tgacacccct ggacgtggtg aaggttcgcc
181tgcagtctca gcggccctcc atggccagcg agctgatgcc ttcctccaga ctgtggagcc
241tctcctatac caaatggaag tgcctcctgt attgcaatgg tgtcctggag cctctgtacc
301tgtgcccaaa tggtgcccgc tgtgccacct ggtttcaaga ccctacccgc ttcactggca
361ccatggatgc cttcgtgaag atcgtgaggc acgagCTGAC CAGGACCCTC TGGAGCGGCC
421TCCCCGCCAC CCTGGTGATG ACTGTGCCAG CTACCGCCAT CTACTTCACT GCCTATGACC
481AACTGAAGGC CTTCCTGTGT GGTCGAGCCC TGACCTCTGA CCTCTACGCA CCCATGGTGG
541CTGGCGCGCT GGCCCGCCTG GGCACCGTGA CTGTGATCAG CCCCCTGGAG CTTATGCGGA
601CAAAGCTGCA GGCTCAGCAT GTGTCGTACC GGGAGCTGGG TGCCTGTGTT CGAACTGCAG
661TGGCTCAGGG TGGCTGGCGC TCACTGTGGC TGGGCTGGGG CCCCACTGCC CTTCGAGATG
721TGCCCTTCTC AGCCCTGTAC TGGTTCAACT ATGAGCTGGT GAAGAGCTGG CTCAATGGGT
781TCAGGCCGAA GGACCAGACT TCTGTGGGCA TGAGCTTTGT GGCTGGTGGC ATCTCAGGGA
841CGGTGGCTGC AGTGCTGACT CTACCCTTTG ACGTGGTAAA GACCCAACGC CAGGTCGCTC
901TGGGAGCGAT GGAGGCTGTG AGAGTGAACC CCCTGCATGT GGACTCCACC TGGCTGCTGC
961TGCGGAGGAT CCGGGCCGAG TCGGGCACCA AGGGACTCTT TGCAGGCTTC CTTCCTCGGA
1021TCATCAAGGC TGCCCCCTCC TGTGCCATCA TGATCAGCAC CTATGAGTTC GGCAAAAGCT
1081TCTTCCAGAG GCTGAACCAG GACCGGCTTC TGGGCGGCTG CCCAACTTTC TTGTACAAAG
1141Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)