Construct: ORF ccsbBroadEn_15071
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018852.1_s300c1, BRDN0000458148
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MPP6 (51678)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84284 | NTPCR | nucleoside-triphosphatase, ... | NM_032324.3 | 100% | 100% | |
| 2 | human | 84284 | NTPCR | nucleoside-triphosphatase, ... | NM_001329453.2 | 63.1% | 63.1% | 291_292ins210 |
| 3 | human | 84284 | NTPCR | nucleoside-triphosphatase, ... | NM_001329452.2 | 47.4% | 46.2% | 295_296ins43;298_299ins163;365_561del |
| 4 | human | 84284 | NTPCR | nucleoside-triphosphatase, ... | NR_138027.1 | 39.2% | (many diffs) | |
| 5 | human | 84284 | NTPCR | nucleoside-triphosphatase, ... | NR_138026.2 | 6.4% | 1_100del;133_134ins163;508_6161del | |
| 6 | human | 84284 | NTPCR | nucleoside-triphosphatase, ... | NR_138024.2 | 6.4% | (many diffs) | |
| 7 | human | 84284 | NTPCR | nucleoside-triphosphatase, ... | NR_138025.2 | 5.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 179
- ORF end:
- 749
- ORF length:
- 570
- Sequence:
-
1 TTNGNTTTNN NNNNGNNNGA NNNTNNCCNG TCCCCGGACG TTGTAAAACG TCTGTTCTAG 61 TATTAAGCTC GGGCCCCAAA TAATGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA 121 ACAAATTGAT GAGCAATGCT TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT 181 GGCCCGGCAC GTGTTCCTAA CGGGGCCCCC AGGAGTTGGA AAAACAACAT TGATCCATAA 241 AGCCAGTGAG GTTTTAAAAT CCTCTGGTGT GCCTGTTGAT GGATTTTATA CCGAAGAAGT 301 CAGACAGGGA GGGAGAAGAA TAGGATTCGA TGTCGTCACG TTGTCCGGCA CCCGGGGGCC 361 TTTATCGAGA GTTGGGTTAG AGCCTCCACC TGGAAAACGT GAATGCCGAG TTGGGCAGTA 421 TGTGGTCGAC CTGACTTCTT TTGAGCAGTT GGCACTACCC GTCTTGAGGA ATGCCGACTG 481 CAGCAGTGGC CCAGGGCAAA GAGTGTGCGT CATCGATGAG ATTGGGAAGA TGGAGCTCTT 541 CAGTCAGCTT TTCATTCAAG CTGTTCGTCA GACGCTGTCT ACCCCAGGGA CTATAATCCT 601 TGGCACAATC CCAGTTCCTA AAGGAAAGCC ACTGGCTCTT GTAGAAGAAA TCAGAAACAG 661 AAAGGATGTG AAGGTGTTTA ATGTCACCAA GGAAAACAGA AACCACCTTC TGCCAGATAT 721 CGTGACGTGC GTGCAGAGCA GCAGGAAGTT GCCAACTTTC TTGTACAAAG TTGGCATTAT 781 AAGAAAGCAT TGCTTATCAA TTTGTTGCAA CGAACAGGTC ACTATCAGTC AAAATAAAAT 841 CATTATTNNC NNNCNNNNNN NNNNCCCCGT TGGGTGAGTC GTATTACATG GGTCATAGCT 901 GTTTCCTGGC AGCTCTGGGC CGTGTCCAGA CTAAGTTAAA AAAAAAAAAG CGGGGGTA