Transcript: Human NR_138024.2

Homo sapiens nucleoside-triphosphatase, cancer-related (NTPCR), transcript variant 4, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
NTPCR (84284)
Length:
6165
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_138024.2
NBCI Gene record:
NTPCR (84284)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_138024.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000359683 TGTCGAGGCTGTATGCCTATG pLKO_005 582 3UTR 100% 6.000 8.400 N NTPCR n/a
2 TRCN0000158973 GAAAGGATGTGAAGGTGTTTA pLKO.1 423 3UTR 100% 13.200 9.240 N NTPCR n/a
3 TRCN0000359756 ACTATAATCCTTGGCACAATC pLKO_005 353 3UTR 100% 10.800 7.560 N NTPCR n/a
4 TRCN0000158621 CAGAAACAGAAAGGATGTGAA pLKO.1 415 3UTR 100% 4.950 3.465 N NTPCR n/a
5 TRCN0000162116 CAGAAAGGATGTGAAGGTGTT pLKO.1 421 3UTR 100% 4.050 2.835 N NTPCR n/a
6 TRCN0000158737 GCTCTTGTAGAAGAAATCAGA pLKO.1 398 3UTR 100% 3.000 2.100 N NTPCR n/a
7 TRCN0000164501 CGATGAGATTGGGAAGATGGA pLKO.1 277 3UTR 100% 2.640 1.848 N NTPCR n/a
8 TRCN0000159349 GAAGGTGTTTAATGTCACCAA pLKO.1 433 3UTR 100% 2.640 1.848 N NTPCR n/a
9 TRCN0000359682 CTTGTAGAAGAAATCAGAAAC pLKO_005 401 3UTR 100% 10.800 6.480 N NTPCR n/a
10 TRCN0000163108 GAAACCACCTTCTGCCAGATA pLKO.1 462 3UTR 100% 4.950 2.970 N NTPCR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_138024.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15195 pDONR223 100% 6.4% None (many diffs) n/a
2 ccsbBroad304_15195 pLX_304 0% 6.4% V5 (many diffs) n/a
3 TRCN0000471658 TCGCAGGTTCGGGTATGCACGCTT pLX_317 67.6% 6.4% V5 (many diffs) n/a
4 ccsbBroadEn_15071 pDONR223 100% 6.4% None (many diffs) n/a
5 ccsbBroad304_15071 pLX_304 0% 6.4% V5 (many diffs) n/a
6 ccsbBroadEn_12783 pDONR223 100% 3.1% None (many diffs) n/a
7 ccsbBroad304_12783 pLX_304 0% 3.1% V5 (many diffs) n/a
8 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 3.1% V5 (many diffs) n/a
9 ccsbBroadEn_15487 pDONR223 0% 2.6% None (many diffs) n/a
10 ccsbBroad304_15487 pLX_304 0% 2.6% V5 (many diffs) n/a
11 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% 2.6% V5 (many diffs) n/a
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