Construct: ORF ccsbBroadEn_15076

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005938.1_s300c1, BRDN0000387792
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SIX4 (51804)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51804 SIX4 SIX homeobox 4 XM_005267759.2 98.3% 98.3% 1_39del
2 human 51804 SIX4 SIX homeobox 4 NM_017420.5 97.3% 97.3% 1_63del
3 human 51804 SIX4 SIX homeobox 4 XR_001750375.2 35.3% 1_134del;933_1097del;2580_6450del
4 mouse 20474 Six4 sine oculis-related homeobox 4 XM_006515632.3 87.5% 88.7% (many diffs)
5 mouse 20474 Six4 sine oculis-related homeobox 4 NM_011382.2 86.7% 87.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2349
ORF length:
2280
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAAAGCGCC TCGGAAGGGC AGGAGGCGCA CCGAGAAGTG GCGGGGGGCG
121CGGCGGTAGG GCTGAGCCCC CCGGCTCCAG CCCCTTTTCC CCTGGAGCCG GGGGACGCCG
181CGACCGCTGC CGCCAGGGTG AGCGGAGAGG AAGGGGCagt ggcggcggcg gcggccggag
241cggcggcgga tcaggtacaa ctccactcgg aacttctggg caggcaccac cacgccGCCG
301CCGCCGCCGC GCAGACCCCG CTGGCCTTCT CGCCCGACCA CGTCGCCTGC GTGTGCGAGG
361CACTGCAGCA GGGGGGCAAC CTGGACCGCC TGGCCCGGTT CCTGTGGTCC CTGCCCCAGA
421GCGACCTGCT ACGTGGCAAC GAGAGCCTGC TGAAGGCGCG GGCGCTCGTG GCCTTCCACC
481AGGGCATCTA CCCCGAGCTC TACAGCATCC TCGAGAGCCA CAGCTTCGAG TCGGCCAACC
541ACCCGCTGCT GCAGCAGCTC TGGTACAAGG CGCGCTACAC CGAGGCCGAG CGAGCCCGCG
601GCCGGCCGCT GGGAGCCGTA GACAAGTACC GGCTGCGCAG GAAATTCCCC CTGCCCCGCA
661CCATCTGGGA CGGCGAGGAG ACGGTGTATT GTTTCAAGGA GAAGTCGCGC AACGCGCTCA
721AGGAGCTCTA CAAGCAGAAT CGCTACCCTT CGCCCGCCGA GAAGCGGCAC CTGGCCAAGA
781TCACCGGCCT CTCCCTCACC CAGGTCAGCA ACTGGTTCAA GAACCGCCGG CAGCGCGACA
841GGAACCCCTC CGAGACCCAG TCCAAAAGTG AGTCAGATGG CAACCCCAGC ACTGAAGATG
901AATCCAGCAA GGGACATGAG GATTTATCTC CTCACCCACT CTCCAGTTCA TCTGATGGCA
961TCACCAACCT CAGCCTTTCC AGTCATATGG AGCCAGTATA TATGCAACAA ATTGGAAATG
1021CTAAGATATC ATTAAGCTCT TCTGGAGTTC TGTTGAATGG AAGCTTGGTA CCTGCAAGTA
1081CTTCACCTGT CTTCCTTAAT GGAAATTCTT TTATTCAGGG ACCCAGTGGA GTTATCCTTA
1141ATGGATTAAA TGTGGGAAAT ACACAGGCAG TGGCATTGAA CCCACCAAAA ATGTCATCAA
1201ACATTGTGAG CAATGGTATA TCCATGACTG ACATACTGGG GTCTACTTCC CAGGACGTGA
1261AGGAATTCAA AGTCCTCCAG AGTTCTGCTA ACTCAGCAAC CACCACGTCC TACAGCCCCA
1321GTGTCCCTGT CTCATTCCCA GGCCTGATAC CCAGCACTGA GGTGAAAAGA GAAGGCATTC
1381AAACAGTGGC TTCCCAAGAT GGAGGGTCTG TAGTGACTTT TACTACACCA GTGCAAATTA
1441ACCAGTATGG CATTGTCCAG ATCCCCAATT CCGGAGCAAA CAGCCAGTTC CTTAATGGGA
1501GCATTGGATT CTCTCCACTG CAGCTGCCCC CTGTGTCAGT GGCAGCTTCA CAAGGTAATA
1561TCTCAGTAAG CTCAAGCACT TCAGATGGAA GCACATTTAC AAGTGAGTCT ACCACAGTCC
1621AGCAAGGAAA GGTTTTCTTG AGCTCTCTTG CTCCCAGTGC AGTGGTATAC ACGGTTCCTA
1681ATACAGGCCA GACTATAGGA TCTGTGAAAC AGGAAGGCTT GGAAAGGAGC CTGGTATTTT
1741CTCAGTTGAT GCCTGTCAAT CAGAATGCAC AAGTAAATGC AAACCTGTCT TCTGAAAACA
1801TCTCGGGGAG TGGCCTGCAT CCACTGGCCT CCTCATTAGT TAATGTATCT CCAACTCACA
1861ATTTTTCTCT CAGTCCCTCT ACACTACTAA ATCCCACTGA GCTAAACCGC GACATTGCCG
1921ATAGCCAACC AATGTCTGCA CCGGTGGCAA GCAAATCTAC TGTGACATCT GTCAGCAACA
1981CTAACTATGC AACTCTTCAG AACTGCTCCC TTATTACTGG TCAAGACCTA TTGTCAGTCC
2041CTATGACTCA GGCTGCCCTT GGGGAAATAG TTCCTACAGC TGAAGATCAG GTAGGTCACC
2101CCTCCCCAGC AGTACATCAG GATTTTGTCC AAGAACATCG TTTGGTTCTG CAATCGGTAG
2161CTAACATGAA AGAGAATTTC TTATCAAATT CTGAGAGCAA AGCAACAAGT AGCTTAATGA
2221TGCTGGACTC TAAATCCAAG TATGTCTTAG ATGGCATGGT TGATACTGTC TGTGAAGACC
2281TGGAAACAGA CAAAAAAGAG CTTGCCAAGC TCCAGACTGT CCAGCTGGAT GAAGATATGC
2341AAGACTTATT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
2401tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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