Construct: ORF ccsbBroadEn_15101
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018961.1_s300c1, BRDN0000458257
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDC42BPG (55561)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_011545157.3 | 95.9% | 66.6% | (many diffs) |
| 2 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | NM_017525.3 | 95.4% | 65.6% | (many diffs) |
| 3 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_011545155.3 | 94.3% | 64.9% | (many diffs) |
| 4 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_017017996.2 | 94.3% | 64.8% | (many diffs) |
| 5 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_011545156.3 | 93.9% | 64.4% | (many diffs) |
| 6 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_011545158.3 | 93.6% | 68.1% | (many diffs) |
| 7 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_011545159.3 | 88.7% | 68.8% | (many diffs) |
| 8 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_011545160.3 | 88.1% | 58.6% | (many diffs) |
| 9 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_017017997.2 | 70.3% | 89.4% | (many diffs) |
| 10 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_011545161.3 | 69.7% | 89.7% | (many diffs) |
| 11 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_017017998.2 | 69.6% | 94.1% | (many diffs) |
| 12 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XR_949988.3 | 68.2% | (many diffs) | |
| 13 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XR_949989.3 | 62.4% | (many diffs) | |
| 14 | human | 55561 | CDC42BPG | CDC42 binding protein kinas... | XM_017017999.1 | 49.6% | 20.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3153
- ORF length:
- 3084
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccat ggagcggcgg ctgcgcgcgc tggagcagct ggcgcggggc gaggccggcg 121 gctgcccggg gctcgacggc ctcctagatc tgctgctggc gctgcaccac gagctcagca 181 gcggccccct acggcgggag cgcagcgtgg cgcagttcct gagctgggcc agccccttcg 241 tatcaaaggt gaaagaactg cgtctgcaga gagatgactt tgagatcttg aaggtgatcg 301 gccgaggagc ctttggggag gtcaccgtgg tgaggcagag ggacactggg cagatttttg 361 ccatgaaaat gctgcacaag tgggagatgc tgaagagggc tgagacagcc tgtttccggg 421 aggagcggga tgtgctcgtg aaaggggaca gccgttgggt gaccactctg cactatgcct 481 tccaagacga ggagtacctg taccttgtga tggactacta tgctggtggg gacctcctga 541 cgctgctgag ccgcttcgag gaccgtctcc cgcccgagct ggcccagttc tacctggctg 601 agatggtgct ggccatccac tcgctgcacc agctgggtta tgtccacagg gatgtcaagc 661 cagacaacgt cctgctggat gtgaacgggc acattcgcct ggctgacttc ggctcctgcc 721 tgcgtctcaa caccaacggc atggtggatt catcagtggc agtagggacg ccggactata 781 tctcccctga gatcctgcag gccatggagg agggcaaggg ccactacggc ccacagtgtg 841 actggtggtc gcttggagtc tgcgcctatg agctgctctt tggggagacg cccttctatg 901 ctgagtcctt ggtggaaacc tacggcaaga tcatgaacca cgaggaccac ctgcagttcc 961 ccccggacgt gcctgacgtg ccagccagcg cccaagacct gatccgccag ctgctgtgtc 1021 gccaggaaga gcggctaggc cgtggtgggc tggatgactt ccggaaccat cctttcttcg 1081 aaggcgtgga ctgggagcgg ctggcgagca gcacggcccc ctatattcct gagctgcggg 1141 ggcccatgga cacctccaac tttgatgtgg atgacgacac cctcaaccat ccagggaccc 1201 tgccaccgcc ctcccacggg gccttctccg gccatcacct gccattcgtg ggcttcacct 1261 acacctcagg cagtcacagt cctgagagca gctctgaggc ttgggctgcc ctggagcgga 1321 agctccagtg tctggagcag gagaaggtgg agctgagcag gaagcaccaa gaggccctgc 1381 acgcccccac agaccatcgg gagctggagc agctacggaa ggaagtgcag actctgcggg 1441 acaggctgcc agagatgctg agggacaagg cctcattgtc ccagacggat gggcccccag 1501 ctggtagccc aggtcaggac agtgacctac ggcaggagct tgaccgactt caccgggagc 1561 tggccgaggg tcgggcaggg ctgcaggctc aggagcagga gctctgcagg gcccaggggc 1621 agcaggagga gctgcttcag aggctacagg aggcccagga gagagaggcg gccacagcta 1681 gccagacccg ggccctgagc tcccagctgg aggaagcccg ggctgcccag agggagctgg 1741 aggcccaggt gtcctccctg agccggcagg tgacgcagct gcagggacag tgggagcaac 1801 gccttgagga gtcgtcccag gccaagacca tccacacggc ctctgagacc aacgggatgg 1861 gaccccctga gggtgggcct caggaggccc aactgaggaa ggaggtggcc gccctgcgag 1921 agcagctgga gcaggcccac agccacaggc ggagtggtaa ggaggaggct ctgtgccagc 1981 tgcaggagga aaaccggagg ctgagccggg agcaggagcg gctagaagca gagctggccc 2041 aggagcagga gagcaagcag cggctggagg gtgagcggcg ggagacggag agcaactggg 2101 aggcccagct cgccgacatc ctcagctggg tgaatgatga gaaggtctca agaggctacc 2161 tgcaggccct ggccaccaag atggcagagg agctggagtc cttgaggaac gtaggcaccc 2221 agacgctccc tgcccggcca ctggaccacc agtggaaggc gcggcgactg cagaagatgg 2281 aggcctcggc caggctggag ctgcagtcag cgctggaggc cgagatccgc gccaagcagg 2341 gcctgcagga gcggctgaca caggtgcagg aggcccagct gcaggctgag cgccgtctgc 2401 aggaggccga gaagcagagc caggccctgc aacaggagct cgccatgctg cgggaggagc 2461 tgcgggcccg agggccagtg gacaccaagc cctcaaactc cctgattccc ttcctgtcct 2521 tccggagctc agagaaggat tctgccaagg accctggcat ctcaggagag gccacaaggc 2581 atggaggaga gccagatctg aggccggagg gccgacgcag cctgcgcatg ggggctgtgt 2641 tccccagagc acccactgcc aacacagcct ctacagaagg tcttcctgct aagcccggct 2701 cacacacgct gcgcccccgg agcttcccat ccccgaccaa gtgtctccgc tgcacctcgc 2761 tgatgctggg cctgggccgc cagggcctgg gttgtgatgc ctgcggctac ttttgtcaca 2821 caacctgtgc cccacaggcc ccaccctgcc ccgtgccccc tgacctcctc cgcacagccc 2881 tgggagtaca ccccgaaaca ggcacaggca ctgcctatga gggctttctg tcggtgccgc 2941 ggccctcagg tgtccggcgg ggctggcagc gcgtgtttgc tgccctgagt gactcacgcc 3001 tgctgctgtt tgacgcccct gacctgaggc tcagcccgcc cagtggggcc ctcctgcagg 3061 tcctagatct gagggacccc cagttctcgg ctacccctgt cctggcAAAT GATTTTATTT 3121 TGACTGATAG TGACCTGTTC GTTGCAACAA ATTGATGAGC AATGCTTTTT TATAATGCCA 3181 ACTTTGTACA AAAAAGTTGG CACCATGGAG CGGCGGCTGC TGCTGGACGC GCGGCCAAGA 3241 CCCCGGCCCG TGTACACACT CAAGGAGGCT TACGACAACG GGCTGCCGCT GCTGCCTCAC 3301 ACGCTCTGCG CTGCCATCCT CGACCAGGAT CGACTTGCGC TTGGCACCGA GGAGGGGCTC 3361 TTTGTCATCC ATCTGCGCAG CAACGACATC TTCCAGGTGG GGGAGTGCCG GCGCGTGCAG 3421 CAGCTGACCT TGAGCCCCAG TGCAGGCCTG CTGGTCGTGC TGTGTGGCCG CGGCCCCAGC 3481 GTGCGTCTCT TTGCCCTGGC GGAGCTGGAG AACATAGAGG TAGCAGGTGC CAAGATCCCC 3541 GAGTCTCGAG GCTGCCAGGT GCTGGCAGCT GGAAGCATCC TGCAGGCCCG CACCCCGGTG 3601 CTCTGTGTAG CCGTCAAGCG CCAGGTGCTC TGTTACCAGC TGGGCCCGGG CCCTGGGCCC 3661 TGGCAGCGCC GCATCCGTGA GCTGCAGGCA CCTGCCACTG TGCAGAGCCT GGGCTGCTGG 3721 GCGACCGGCT ATGTGTGGGC GCCGCCGGTG GCTTTGCACT CTACCCGCTG CTCAACGAGG 3781 CTGCGCCGTT GGCGCTGGGG GCCGGTTTGG TGCNTGAAGG AGCTGCCACC ATCCCGCGGG 3841 GGCCTGGGTG AGGCACTGGG TGCCGTGAGC TTAGCCTCAG CGAGTTCCTG CTACTCTTCA 3901 CCACTGCTGG CATCTACGTG GATGGCGCAG GCCGCAAGTC CTCGTGGNCC ACGAGCTGTT 3961 GTGGCCAGCA GCGCCCATGG GCTGGGGTGC GGCCCCTCAA TCCAGAGGGC TCCCTGTTCC 4021 TCTACGGCAC CGAGAAGGTC CGCCTGACCT ACCTCAGGAA CCAGCTGGCA GAGAAGGACG 4081 AGTTCGACAT CCCGGACCTC ACCGACAACA GCCGGCGCCA GCTGTTCCGC ACCAAGAGCA 4141 AGCGCCGCTT CTTTTTCCGC GTGTCGGAGG AGCAGCAGAA GCAGCAGCGC AGGGAGATGC 4201 TGAAGGACCC TTTTGTGCGC TCCAAGCTCA TCTCGCCGCC TACCAACTTC AACCACCTAG 4261 TACACGTGGG CCCTGCCAAC GGGCGGCCCG GCGCCAGGGA CAAGTCCCCG GCTCCCGAAG 4321 AGAAGGGCCG AGTTGCCCGC GGCTCCGGCC CACAGCGGCC CCACAGCTTC TCCGAGGCGT 4381 TGCGGCGCCC AGCCTCCATG GGCAGCGAAG GCCTCGGTGG AGACGCAGAC CCCATGAAGA 4441 GGAAACCCTG GACATCCCTG TCCAGCGAGT CTGTGTCCTG CCCCCAGGGA TCGCTGAGCC 4501 CTGCAACCTC CCTAATGCAG GTCTCAGAAC GGCCCCGAAG CCTCCCCCTG TCCCCTGAAT 4561 TGGAGAGCTC TCCTTTGCCA ACTTTCTTGT ACAAAGTTGG CATTATAAGA AAGCATTGCT 4621 TATCAATATG TTCAACGAAC AGGTCACTAT CAGTCAAAAT AAAATCATTA TTGCCATCCA 4681 GCTATCTCAG G