Transcript: Human XR_949988.3

PREDICTED: Homo sapiens CDC42 binding protein kinase gamma (CDC42BPG), transcript variant X11, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CDC42BPG (55561)
Length:
3462
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_949988.3
NBCI Gene record:
CDC42BPG (55561)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_949988.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000358255 AGTAGGGACGCCGGACTATAT pLKO_005 809 3UTR 100% 13.200 18.480 N CDC42BPG n/a
2 TRCN0000199864 GCTTGGAGTCTGCGCCTATGA pLKO.1 899 3UTR 100% 1.650 2.310 N CDC42BPG n/a
3 TRCN0000199882 GCCCTCAAACTCCCTGATTCC pLKO.1 2537 3UTR 100% 1.350 1.080 N CDC42BPG n/a
4 TRCN0000358254 TGTCCTGGCCTCTGATGTTAT pLKO_005 3200 3UTR 100% 13.200 9.240 N CDC42BPG n/a
5 TRCN0000358253 CCATGGACACCTCCAACTTTG pLKO_005 1192 3UTR 100% 10.800 7.560 N CDC42BPG n/a
6 TRCN0000368508 CCTTCGTATCAAAGGTGAAAG pLKO_005 283 3UTR 100% 10.800 7.560 N CDC42BPG n/a
7 TRCN0000021471 CCCTTCGTATCAAAGGTGAAA pLKO.1 282 3UTR 100% 4.950 3.465 N CDC42BPG n/a
8 TRCN0000199657 GCTGGGTGAATGATGAGAAGG pLKO.1 2173 3UTR 100% 4.050 2.835 N CDC42BPG n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_949988.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15101 pDONR223 32.6% 68.2% None (many diffs) n/a
2 ccsbBroad304_15101 pLX_304 0% 68.2% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000473794 TAAGCAATTCAATCCATGGTATCC pLX_317 9.2% 68.2% V5 (not translated due to prior stop codon) (many diffs) n/a
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