Construct: ORF ccsbBroadEn_15104
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018859.1_s300c1, BRDN0000458155
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- BMP2K (55589)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55589 | BMP2K | BMP2 inducible kinase | NM_017593.4 | 97.2% | 60.5% | (many diffs) |
| 2 | human | 55589 | BMP2K | BMP2 inducible kinase | XM_011532102.1 | 92.6% | 57.9% | (many diffs) |
| 3 | human | 55589 | BMP2K | BMP2 inducible kinase | XM_005263117.1 | 56.6% | 35.6% | (many diffs) |
| 4 | human | 55589 | BMP2K | BMP2 inducible kinase | NM_198892.1 | 55.2% | 34.5% | (many diffs) |
| 5 | human | 55589 | BMP2K | BMP2 inducible kinase | XM_017008381.1 | 50.3% | 29.3% | (many diffs) |
| 6 | human | 55589 | BMP2K | BMP2 inducible kinase | XM_017008382.1 | 31.4% | 10.4% | (many diffs) |
| 7 | mouse | 140780 | Bmp2k | BMP2 inducible kinase | XM_006534789.3 | 84.3% | 57.9% | (many diffs) |
| 8 | mouse | 140780 | Bmp2k | BMP2 inducible kinase | XM_006534788.3 | 77.7% | 52.8% | (many diffs) |
| 9 | mouse | 140780 | Bmp2k | BMP2 inducible kinase | NM_080708.1 | 49% | 33% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 1305
- ORF length:
- 1212
- Sequence:
-
1 TTTTATTTTG ACTGATAGTG ACCTGTTCGT TGCAACAAAT TGATGAGCAA TGCTTTTTTA 61 TAATGCCAAC TTTGTACAAA AAAGTTGGCA CCATGAAGAA GTTCTCTCGG ATGCCCAAGT 121 CGGAGGGCGG CAGCGGCGGC GGAGCGGCGG GCGGCTCGTC CGTGGGGGTC CGGGTGTTCG 181 CGGTCGGCCG CCACCAGGTC ACCCTGGAAG AGTCGCTGGC CGAAGGTGGA TTCTCCACAG 241 TTTTCCTCGT GCGTACTCAC GGTGGAATCC GATGTGCATT GAAGCGAATG TATGTCAATA 301 ACATGCCAGA CCTCAATGTT TGTAAAAGGG AAATTACAAT TATGAAAGAG CTATCTGGTC 361 ACAAAAATAT TGTGGGCTAT TTGGACTGTG CTGTTAATTC AATTAGTGAT AATGTATGGG 421 AAGTCCTTAT CTTAATGGAA TATTGTCGAG CTGGACAGGT AGTGAATCAA ATGAATAAGA 481 AGCTACAGAC GGGTTTTACA GAACCAGAAG TGTTACAGAT ATTCTGTGAT ACCTGTGAAG 541 CTGTTGCAAG GTTGCATCAG TGTAAGACTC CAATAATTCA CCGGGATCTG AAGGTAGAAA 601 ATATTTTGTT GAATGATGGT GGGAACTATG TACTTTGTGA CTTTGGCAGT GCCACTAATA 661 AATTTCTTAA TCCTCAAAAA GATGGAGTTA ATGTAGTAGA AGAAGAAATT AAAAAGTATA 721 CAACTCTGTC ATACAGAGCC CCTGAAATGA TCAACCTTTA TGGAGGGAAA CCCATCACCA 781 CCAAGGCTGA TATCTGGGCA CTGGGATGTC TACTCTATAA ACtttgtttc ttcactcttc 841 cttttggtga gagtcaggtt gctatctgtg atggcaactt caccatccca gacaattctc 901 gttactcccg taacatacat tgcttaataa ggttcatgct tgaaccagat ccggaacata 961 gacctgatat atttcaagtg tcatattttg catttaaatt tgccaaaaag gattgtccag 1021 tctccaacat caataattct tctattcctt cagctcttcc tgaaccgatg gctgctagtg 1081 aagcagctgc taggaaaagc caaataaaag ccagaataac agataccatt ggaccaacag 1141 aaacctcaat tgcaccaaga caaagaccaa aggccaactc tgctactact gccactccca 1201 gtgtgctgac cattcaaagt tcagcaacac ctgttaaagt ccttgctcct ggtgaattca 1261 gtaaccatag accaaaaggg gcactaagac CTGGAAAAGG GCCCTGAAAA TTTATTGGTT 1321 CAGGGAACTC CTCAGCAGCC GCCACAGCAG CATAGAGTAC TCCAGCAACT ACAGCAGGGA 1381 GATTGGAGAT TACAGCAACT CCCATTTACA GCATCGTCAT CCTCACCAGC AGCAGCAGCA 1441 GCAGCAGCAG CAACAGCAAC AGCAGCAGCA GCAACAGCAA CAGCAGCAGC AGCAGCAGCA 1501 GCAGCAGCAC CACCACCCAC CACCACCACC ACCTACTTCA AGATGCTTAT ATGCAGCAGT 1561 ATCAACATGC AACACAGCAG CAACAGATGC TTCAACAACA ATTTTTAATG CATTCGGTAT 1621 ATCAACCACA ACCTTCTGCA TCACAGTATC CTACAATGAT GCCGCAGTAT CAGCAGGCTT 1681 TCTTTCAACA GCAGATGCTA GCTCAACATC AGCCGTCTCA ACAACAGGCA TCACCTGAAT 1741 ATCTTACCTC CCCTCAAGAG TTCTCACCAG CCTTAGTTTC CTACACTTCA TCACTTCCAG 1801 CTCAGGTTGG AACCATAATG GACTCCTCCT ATAGTGCCAA TAGGTCAGTT GCTGATAAAG 1861 AGGCCATTGC AAATTTCACA AATCAGAAGA ACATCAGCAA TCCACCTGAT ATGTCAGGGT 1921 GGAATCCTTT TGGAGAGGAT AATTTCTCTA AGTTAACAGA AGAGGAACTA TTGGACAGAG 1981 AATTTGACCT TCTAAGATCA AGTAAGGGAC ACTTGAAGGC TTATTTTGCT TCACAATTGC 2041 CAACTTTCTT GTACAAAGTT GGCATTATAA GAAAGCATTG CTTATCAATT TGTTGCAACG 2101 AACAGGTCAC TATCAGTCAA AATAAAATCA TTATTGCCAT CCAGCTGATT C