Construct: ORF ccsbBroadEn_15184
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016891.1_s300c1, BRDN0000398579
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KRTAP9-2 (83899)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 83899 | KRTAP9-2 | keratin associated protein 9-2 | NM_031961.3 | 98.4% | 98.2% | (many diffs) |
| 2 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_001318227.1 | 96.1% | 94.8% | (many diffs) |
| 3 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | XM_003846481.1 | 93.6% | 90.2% | (many diffs) |
| 4 | human | 81870 | KRTAP9-9 | keratin associated protein 9-9 | NM_030975.2 | 93.2% | 91.9% | (many diffs) |
| 5 | human | 100505724 | KRTAP9-7 | keratin associated protein 9-7 | NM_001277332.1 | 91.9% | 89.6% | (many diffs) |
| 6 | human | 83901 | KRTAP9-8 | keratin associated protein 9-8 | NM_031963.3 | 88.5% | 87.9% | (many diffs) |
| 7 | human | 100507608 | KRTAP9-6 | keratin associated protein 9-6 | NM_001277331.1 | 87.3% | 81% | (many diffs) |
| 8 | human | 83900 | KRTAP9-3 | keratin associated protein 9-3 | NM_031962.3 | 86.9% | 86.2% | (many diffs) |
| 9 | human | 85280 | KRTAP9-4 | keratin associated protein 9-4 | NM_033191.3 | 85.8% | 85% | (many diffs) |
| 10 | human | 728318 | KRTAP9-1 | keratin associated protein 9-1 | NM_001190460.1 | 63.1% | 55.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 591
- ORF length:
- 522
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCCACTGT TGCTCCCCTT GCTGTCAGCC TACCTGCTGC AGGACCACCT 121 GCTGCAGGAC CACCTGCTGG AAGCCCACCA CTGTGACCAC CTGCAGCAGC ACACCCTGCT 181 GCCAGCCCGC CTGCTGTGTG TCCAGCTGCT GCCAGCCTTG CTGCCGCCCA ACTTGCTGTC 241 AAAACACCTG CTGTAGGACC ACCTGCTGCC AGCCCACCTG TGTGACCAGC TGCTGCCAGC 301 CTTCTTGCTG CTTGacaccc tgctgccagc ccacctgctg tgggtccagc tgctgtggcc 361 aaaccagctg tgggtccagc tgtggccaga gcagctcctg tgcacctgtg tactgcagaa 421 gaacctgcta ctaccccacg actgtctgcc tgcctggttg cctaaaccag agctgtggct 481 ccaactgctg ccagccctgc tgccgcccag cctgctgtga gacCACCTGC TGTAGGACCA 541 CCTGCTGCCA GCCCACCTGT GTGACCAGCT GCTGCCAGCC TTCTTGCTGC TTGCCAACTT 601 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac